PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000138.1_g00030.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 497aa    MW: 56214.3 Da    PI: 6.384
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000138.1_g00030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.25.3e-2944127186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW+++e+l+L+++r+em+ ++r++ lk+plW+evs+km+e g++rs+k+C+ek+en+ k+++++keg+++r  ++ +++++f+qle
  Itr_sc000138.1_g00030.1  44 RWPHEETLTLLKIRSEMDLTFRDSTLKGPLWDEVSRKMEEFGYHRSAKKCREKFENIYKYHRRTKEGRSGR--QTGKNYRFFEQLE 127
                              8********************************************************************97..56668******97 PP
2trihelix96.13.1e-30333418186
                 trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                              rW+k+ev aLi++r++++ +  + g++k+plWe++s+ m++ g+ r++k+Ckekwen+nk+y+++k+++k+r +e+s+tcpyf+ l
  Itr_sc000138.1_g00030.1 333 RWPKSEVEALIRIRTNLDLQNHDsGSSKGPLWEDISAEMKKIGYDRNAKRCKEKWENINKYYRRVKDSNKRR-PEDSKTCPYFHIL 417
                              8***************9988775389********************************************97.99*********88 PP

                 trihelix  86 e 86 
                              +
  Itr_sc000138.1_g00030.1 418 D 418
                              7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.38737101IPR017877Myb-like domain
SMARTSM007174.7E-441103IPR001005SANT/Myb domain
PfamPF138371.4E-2043127No hitNo description
CDDcd122031.55E-2343108No hitNo description
PROSITE profilePS500907.236326391IPR017877Myb-like domain
SMARTSM007170.044330393IPR001005SANT/Myb domain
PfamPF138372.6E-22332420No hitNo description
CDDcd122031.03E-23332398No hitNo description
Gene3DG3DSA:1.10.10.603.9E-4332390IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MLETAVLLDN PGGGAVAEPK NDGGGSGGGG GEEEGGNQNS GGNRWPHEET LTLLKIRSEM  60
DLTFRDSTLK GPLWDEVSRK MEEFGYHRSA KKCREKFENI YKYHRRTKEG RSGRQTGKNY  120
RFFEQLEVFD AMQGGGNKIS GEDTAELASP TPVAMIKPNT NIVQDFRIGF GAGADVLSAS  180
TSTTYSSGKD SGGSSARRRR ERKLAGYFEK LMKEVLEKQE NLQKKFLEAI ERCERERMAR  240
EEAWKKQEIE RLRREQQSLA QERAVAEAKD AAVIAFLQKI AKHPILVHVE QQPQNLVHSE  300
QQPQKPQSEV LEPQNNNNNN NGSAGETTPS SSRWPKSEVE ALIRIRTNLD LQNHDSGSSK  360
GPLWEDISAE MKKIGYDRNA KRCKEKWENI NKYYRRVKDS NKRRPEDSKT CPYFHILDSL  420
YQTKSRKLEL SPAPDLPNFN LKAGEMLLQI MTQNQPGKED GERSNNAHQA QEHDEDEDVD  480
EDNSESEDGF QVVANQP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177491.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391177e-69TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A484L4341e-177A0A484L434_9ASTE; Uncharacterized protein
STRINGXP_009626647.11e-169(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97942328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-51Trihelix family protein