PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000138.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NF-YB | ||||||||
Protein Properties | Length: 231aa MW: 24626.5 Da PI: 8.2621 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 177 | 1.8e-55 | 28 | 123 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 +e drflPianvsrimkk+lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv++lk+yl Itr_sc000138.1_g00005.1 28 KELDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVASLKAYL 113 789*********************************************************************************** PP NF-YB 88 kkyrelegek 97 +kyre+egek Itr_sc000138.1_g00005.1 114 NKYRETEGEK 123 ********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.1E-53 | 26 | 144 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.88E-40 | 31 | 144 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-27 | 33 | 97 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.5E-19 | 61 | 79 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 64 | 80 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.5E-19 | 80 | 98 | No hit | No description |
PRINTS | PR00615 | 1.5E-19 | 99 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MTGKRAHPGS PTGSPLSGNS PPDTGSSKEL DRFLPIANVS RIMKKALPAN AKISKEAKET 60 VQECVSEFIS FITGEASDKC QREKRKTING DDLLWAMTTL GFENYVASLK AYLNKYRETE 120 GEKNSMARID ANNTENSPTS SNSNNNNNNF AIGAASPGGN FINGSFSKII GFGGEAHHHH 180 HLLQMSSNNG GGGGGGMMMS MGKAVKGIDG NVQRPAAMAT TDHDLHGIIE W |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-47 | 28 | 118 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-47 | 28 | 118 | 2 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956097 | 5e-69 | EU956097.1 Zea mays clone 1557377 nuclear transcription factor Y subunit B-3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019177294.1 | 1e-117 | PREDICTED: nuclear transcription factor Y subunit B-1-like | ||||
TrEMBL | A0A2G3B250 | 6e-72 | A0A2G3B250_CAPCH; Nuclear transcription factor Y subunit B-3 | ||||
STRING | XP_004304851.1 | 5e-72 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 4e-62 | nuclear factor Y, subunit B3 |