PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000134.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 627aa    MW: 68570.2 Da    PI: 5.4598
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000134.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-08510558348
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                              +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Itr_sc000134.1_g00013.1 510 PWTLNEVVKLVEGVSRYGVGRWSEIKRLAFancPYRTSVDLKDKWRNLL 558
                              8***************************9999*9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.766503562IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-13504560IPR009057Homeodomain-like
SMARTSM007172.3E-8507560IPR001005SANT/Myb domain
CDDcd116601.65E-19509559No hitNo description
SuperFamilySSF466892.32E-16509564IPR009057Homeodomain-like
PfamPF002493.9E-6510558IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MESVIGVETD GEAKVEDSVV AASTSVSSCL PEETADPIVY KLVRVDGDGR LVPATDDEVM  60
AVEDLLEDDK CEVGQVIDAE QTVECNKIEA YHLGKTQFEN PQGQPFSEIH EADVVTFNVP  120
HKLLPDSDNV NTQGKSAVDK YLQATVPPLT SEYSAVDKSG SAEGCSAPSD AFSENNLLAS  180
KAGASWKPDF SKLKGEICLE NLTVKELHET FKAAFGRETS VKDKQWLKRR ISMGLSNSCD  240
FSCTSFVIED SRVVKKVKEN IASVNGSISK DPIVALPNIN SGSSSGHDDK VESPANIIEG  300
NIPNSTLEGC IVSEGHNMEQ TAAKRVRKPT KRYIEELSEV ESRESSGKPM SSEKICGYKS  360
THPSNHVISI LKARPDGKPL FMRQDSLGGS GVQIPCVSRI RRGRPRENFM NLLNLQPNGT  420
DMAAELVKNV GDTHIDQTDE VLKTSLSPGW IQQPLIATSE EGKHSPESKI IEMGSNMEHE  480
NMDLYEDHSD DSMMAMPTPK GGMRRKHHRP WTLNEVVKLV EGVSRYGVGR WSEIKRLAFA  540
NCPYRTSVDL KDKWRNLLKA SNVQLPAEKG IQNSRKHAAI LIPTSILLQV RELAEMQGNI  600
SPSLNQSKIA GLGSGGRSAD EGRVGYV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194346.10.0PREDICTED: uncharacterized protein LOC109188221 isoform X1
RefseqXP_019194347.10.0PREDICTED: uncharacterized protein LOC109188221 isoform X1
TrEMBLA0A484KHS10.0A0A484KHS1_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000063420.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118812023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-97TRF-like 6