PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000133.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 361aa    MW: 41121.1 Da    PI: 5.202
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000133.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.14.5e-36541452102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+ye++ed++++++isws  +nsf+v+d+++fa+++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F 
  Itr_sc000133.1_g00004.1  54 FLTKTYELVEDPTTNDIISWSGGNNSFIVWDPRNFATNLLPRYFKHSNFSSFVRQLNTYGFRKVNPDK---------WEFANEGFL 130
                              9********************999*****************************************999.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +g+++ll++i+r+k+
  Itr_sc000133.1_g00004.1 131 RGQRHLLRTIRRRKT 145
                              ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.07E-3650143IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.3E-3950143IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.6E-6150143IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3154143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-195477IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-1992104IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434093117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-19105117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDPFASRVKE EMMGWSSSCL SVNEDCFDMS EDNNHNHDVP QPLEGLHDTG PPPFLTKTYE  60
LVEDPTTNDI ISWSGGNNSF IVWDPRNFAT NLLPRYFKHS NFSSFVRQLN TYGFRKVNPD  120
KWEFANEGFL RGQRHLLRTI RRRKTPPQTQ SSGQALECCV EVGRFGLDGE IDRLKRDKQV  180
LMMELVKLRQ NQQTTKAHLK AMEAKIKGTE VKQQQMMSFL AKAMRNPEFM HQIMQQRERR  240
KEIAEAISNK RRRPIDQGPS NLSAHHHHDM SLEAHDFAGV SGYDMDSLEL EELAKSMEEP  300
AGSSGDMMMN LNQECGVGGG GGGKGPDDEG FWEDLLNDSN KLIEEEIGLL NFGDCRAYDD  360
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-255214518122Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238252RRKEIAEAISNKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180816.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-117HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1S4BCF01e-130A0A1S4BCF0_TOBAC; heat stress transcription factor A-6b-like isoform X1
STRINGXP_009798078.11e-130(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-118heat shock transcription factor A6B