PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000132.1_g00026.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARR-B
Protein Properties Length: 633aa    MW: 69270.5 Da    PI: 6.0164
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000132.1_g00026.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.34e-29200253155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              kpr++W+ eLH++Fv av+qL G+ekA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Itr_sc000132.1_g00026.1 200 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILELMNVEGLTRENVASHLQKYRL 253
                              79*******************.********************************8 PP
2Response_reg80.74.9e-27261341109
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl vdD+p+ ++ll+ +l+k +y +v+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++ +
  Itr_sc000132.1_g00026.1  26 VLAVDDDPICLKLLEGLLRKCQY-HVTTTSQARMALNMLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDTK 109
                              799********************.***************888889*******************87754.558************* PP

                              HHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                              ++ + +  Ga d+l+Kp+ +eel++
  Itr_sc000132.1_g00026.1 110 LVMKGITHGACDYLVKPVRIEELRN 134
                              ***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.4E-1651632IPR017053Response regulator B-type, plant
SuperFamilySSF521723.98E-3623148IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.2E-4323147No hitNo description
SMARTSM004481.3E-3224136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.26925140IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.3E-2426135IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.11E-2927140No hitNo description
Gene3DG3DSA:3.40.50.23002.2E-43181192No hitNo description
PROSITE profilePS5129412.048197256IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-30197258IPR009057Homeodomain-like
SuperFamilySSF466891.25E-19198257IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-25200253IPR006447Myb domain, plants
PfamPF002492.4E-6202252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MTVEETMRNM GVDRENYHNF PLGMRVLAVD DDPICLKLLE GLLRKCQYHV TTTSQARMAL  60
NMLRENKDRF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANSDTKL VMKGITHGAC  120
DYLVKPVRIE ELRNIWQHVI RRKKSESKGQ NQDNGYRGNG EGGQGFPLTG SAEQNALLNK  180
KRKDEEDETN ENEDPSSQKK PRVVWSIELH RKFVAAVNQL GIEKAVPKRI LELMNVEGLT  240
RENVASHLQK YRLYLKRISS VATQQANMVA ALRGKDSAFM RMASLDGLGD FQALGGPGRF  300
NHATLSTYTP ADMLGRLSSA TGVSIRNLSA SALVQSNHAQ NLENSLGSDG NLNPNISLSS  360
HNAATLFQGI PSPLAVQELN PLENSRALTA ASAFADSGSV IGSSTNPMML QGSPKQGLIG  420
GGFGNQHSLN MASLSSELYN TGVNSSSNFL GHGRSSENWQ TSIQVSEFQS GSYPLPEPFS  480
HSQLPQNCER EHESSAATHL HSSPVGFSST TSASTTFEDS REPQVPSQLW GDGKQNQNSN  540
DIFRNLSSHV PPSLSQGSLV LFHQNGNEMP TTEPRTRSNE DNLLESTKTH GAFVSQGFDT  600
LDDLMNAVIK QEQDGGILVG EFGFDAYPFG SCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-25196259164ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170922.10.0PREDICTED: two-component response regulator ORR22-like isoform X1
TrEMBLM0ZUD30.0M0ZUD3_SOLTU; Two-component response regulator
STRINGXP_009599949.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-117response regulator 12