PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000130.1_g00029.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 496aa    MW: 54651.3 Da    PI: 4.7194
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000130.1_g00029.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS334.32.2e-1021114901374
                     GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                              lv+lL+++Aea++   ++ ela+ +L rl+elasp++ ++m+Rlaayft AL+a l + +s  +k++p+s+++  +++++laa++l
  Itr_sc000130.1_g00029.1 111 LVHLLMAAAEALTGlnKSRELARVILVRLKELASPRDgSNMERLAAYFTDALQALLDGAGSLHAKSFPASHEH--SHADALAAFQL 194
                              68***********84355569***********9998769*******************888888888777776..699******** PP

                     GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeeleetg 162
                              ++++sP++kf+h+taNqaIleav +++rvHi+D+di++G+QW++L+qaL sR+   ++p+lRiT++++   g     s  +++etg
  Itr_sc000130.1_g00029.1 195 LQDMSPYVKFGHFTANQAILEAVTHDRRVHIVDYDIMEGIQWASLMQALISREdgLPAPHLRITALSRGGGGgssrrSFCSIQETG 280
                              *****************************************************544588********96555887778889***** PP

                     GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248
                              +rL+ fA+++g pf+f+    ++ e++++++L++ +gEal++n++l+l ++  +s ++     ++L+   +l+P++v++ve+ a  
  Itr_sc000130.1_g00029.1 281 RRLTAFAASIGQPFSFHQCRLDSDEAFKPSALKLVRGEALIINCMLHLPHFSYRSPDSIA---SFLSGAATLNPRLVTLVEEAAPA 363
                              ******************9999*****************************866665555...9*******************888 PP

                     GRAS 249 ..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl.eeaGFkpvplse 331
                                 ++ F++rf+++l++ysal+dslea++p ++++r+ vEr++lg++i+ +++ + ++r e+     +W e++ e+aGF+p ++s 
  Itr_sc000130.1_g00029.1 364 ppPDGGFVDRFMDTLHHYSALYDSLEAGFPMQDQARTLVERVFLGPKISVAITRSYRSRGEEYG--WSWGEWVpENAGFRPKTISF 447
                              77899*************************************************9999776655..8999998456********** PP

                     GRAS 332 kaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                               + +qaklll  ++ dgyrvee  ++ lvlgWk+r+L+s+S+W+
  Itr_sc000130.1_g00029.1 448 ANRCQAKLLLGLFN-DGYRVEEIgNHKLVLGWKSRRLLSASVWT 490
                              **************.******97588999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.07485470IPR005202Transcription factor GRAS
PfamPF035147.5E-100111490IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MMMADEILPD FDFCGYSSYS TTTTSSSDGD HAATWNGSSP LVDWEFFSGG DEFGDLIDSM  60
MEGQTANTTV GLNFPAIPTV VEVENENQDE DEDEDEDGEY TIVEDTKGLR LVHLLMAAAE  120
ALTGLNKSRE LARVILVRLK ELASPRDGSN MERLAAYFTD ALQALLDGAG SLHAKSFPAS  180
HEHSHADALA AFQLLQDMSP YVKFGHFTAN QAILEAVTHD RRVHIVDYDI MEGIQWASLM  240
QALISREDGL PAPHLRITAL SRGGGGGSSR RSFCSIQETG RRLTAFAASI GQPFSFHQCR  300
LDSDEAFKPS ALKLVRGEAL IINCMLHLPH FSYRSPDSIA SFLSGAATLN PRLVTLVEEA  360
APAPPPDGGF VDRFMDTLHH YSALYDSLEA GFPMQDQART LVERVFLGPK ISVAITRSYR  420
SRGEEYGWSW GEWVPENAGF RPKTISFANR CQAKLLLGLF NDGYRVEEIG NHKLVLGWKS  480
RRLLSASVWT SPDSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5210449011378Protein SCARECROW
5b3h_D2e-5210449011378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180152.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A314L0K20.0A0A314L0K2_NICAT; Nodulation-signaling pathway 2 protein
STRINGXP_009799696.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-146GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]