PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000130.1_g00026.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 350aa MW: 38248.2 Da PI: 10.1216

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000130.1_g00026.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5e-05	120	142	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F +++L+ H+ + H Itr_sc000130.1_g00026.1 120 SCPVCGQIFMKPDTLELHQAVrH 142 8******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	119	142	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	5.18E-21	144	349	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.0E-14	146	348	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MAINKNSKKN PKPQTRSHHL HKPHSWAVVR SLFTCKHLEQ PKEQRHNRKP KQSQEISKKM 60 GPQHPSFSSS SSPASPNSSI VGSLRAMPFR KLSGCYECRM VVDPVLGLTR DPSLRTTICS 120 CPVCGQIFMK PDTLELHQAV RHAVSELGAE DTSRNVVEII FQSSWLKKHN PICTIDRILK 180 VHNTPKVISR FEEYRDAIKA KANKLPKKHP RCVADGNELL RFHSTTFMCS LGLNGSSNLC 240 NSIPSCAVCG IIKNGFKGAG DVAGKGVLTT ATSWKAHVSG GAAGEEKRAM LVCRVIAGRV 300 KKSLQGSLEE YDSVSGGAGA GAGGYGDLEE LYVFNPKAVL PCFVVIYRGF

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MAINKNSKKN PKPQTRSHHL HKPHSWAVVR SLFTCKHLEQ PKEQRHNRKP KQSQEISKKM  60
GPQHPSFSSS SSPASPNSSI VGSLRAMPFR KLSGCYECRM VVDPVLGLTR DPSLRTTICS  120
CPVCGQIFMK PDTLELHQAV RHAVSELGAE DTSRNVVEII FQSSWLKKHN PICTIDRILK  180
VHNTPKVISR FEEYRDAIKA KANKLPKKHP RCVADGNELL RFHSTTFMCS LGLNGSSNLC  240
NSIPSCAVCG IIKNGFKGAG DVAGKGVLTT ATSWKAHVSG GAAGEEKRAM LVCRVIAGRV  300
KKSLQGSLEE YDSVSGGAGA GAGGYGDLEE LYVFNPKAVL PCFVVIYRGF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019180945.1	0.0	PREDICTED: uncharacterized protein LOC109175997
TrEMBL	A0A4D8Y477	1e-158	A0A4D8Y477_SALSN; Uncharacterized protein
STRING	XP_006434130.1	1e-148	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10723	15	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	7e-92	C2H2-like zinc finger protein