PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000129.1_g00017.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 357aa MW: 38940.5 Da PI: 8.7868

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000129.1_g00017.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.5	2.3e-15	96	187	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +W++ +++Lie + +l+rg+l+ ++W ev++++ + ++ r+ +qCk++++ l+k+yk +k++ ++ + +s++p+ Itr_sc000129.1_g00017.1 96 CWSEAATHTLIESWGSHYVELNRGNLRRQHWMEVADAVnalhgHTKKQYRTDIQCKNRIDTLKKKYKTEKARVSQSPGNYVSSWPF 181 7***********************************999987778889*********************9899999 PP trihelix 82 fdqlea 87 f++l+a Itr_sc000129.1_g00017.1 182 FNSLDA 187 *985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.3E-25	94	188	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MSCQPITTTN TFSPPNSFSN PNSSTTAGAA VDDDESPISK AMSDDELEAT PTSNNSRSPS 60 PAPLSPAANE LAVVPVSSNA PPPAARTPVF PAREDCWSEA ATHTLIESWG SHYVELNRGN 120 LRRQHWMEVA DAVNALHGHT KKQYRTDIQC KNRIDTLKKK YKTEKARVSQ SPGNYVSSWP 180 FFNSLDALIG DNFKPSSSPA TITPRRKTPP ALPPPPSAVP VGPRSKRPVA IDDTVSRRNF 240 SAMAAAAAAA ATEDSDENEE SETSSPPPAP AFSGGNKRKD VGAQLEGFRS LAEAIGKFSD 300 IYKRVEEAKL RQMVDLEKQR MQFAMDLELQ RMKVIMESQV QLQKLKRAKR NNSHAGE

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MSCQPITTTN TFSPPNSFSN PNSSTTAGAA VDDDESPISK AMSDDELEAT PTSNNSRSPS  60
PAPLSPAANE LAVVPVSSNA PPPAARTPVF PAREDCWSEA ATHTLIESWG SHYVELNRGN  120
LRRQHWMEVA DAVNALHGHT KKQYRTDIQC KNRIDTLKKK YKTEKARVSQ SPGNYVSSWP  180
FFNSLDALIG DNFKPSSSPA TITPRRKTPP ALPPPPSAVP VGPRSKRPVA IDDTVSRRNF  240
SAMAAAAAAA ATEDSDENEE SETSSPPPAP AFSGGNKRKD VGAQLEGFRS LAEAIGKFSD  300
IYKRVEEAKL RQMVDLEKQR MQFAMDLELQ RMKVIMESQV QLQKLKRAKR NNSHAGE

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00413	DAP	Transfer from AT3G58630	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019194643.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	A0A484MV88	1e-156	A0A484MV88_9ASTE; Uncharacterized protein
STRING	XP_009760894.1	1e-132	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-45	sequence-specific DNA binding transcription factors