![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000125.1_g00064.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 306aa MW: 33208.9 Da PI: 7.0647 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.4 | 3.5e-33 | 55 | 110 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eClkNhA+ +GghavDGCgEfmp+ ge+gt ++lkCaACgCHRnFHR+e+e Itr_sc000125.1_g00064.1 55 RYRYRECLKNHAVGIGGHAVDGCGEFMPA-GEDGTLDSLKCAACGCHRNFHRKEEEG 110 689*************************9.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.6E-30 | 56 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.7E-31 | 57 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-22 | 57 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 28.016 | 58 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.61E-18 | 162 | 234 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-30 | 164 | 234 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.6E-23 | 175 | 231 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 306 aa Download sequence Send to blast |
MDFDEEQEEE IEMHEMEPEG NYPPLGSSGM GGGEETAGER KNGGGGGGDG GGGIRYRYRE 60 CLKNHAVGIG GHAVDGCGEF MPAGEDGTLD SLKCAACGCH RNFHRKEEEG DGFSHFHHHH 120 HPHLTAYPSF RPSGYLHVAP HRPLALPSSS RDDDVSNPSS SGGAGAAADG GAGSKKRFRT 180 KFSQEQKDKM LAFAERLEWR IQKHDEEAVQ EFCATTNVRR QVFKVWMHNN KHTLGGLRYC 240 VNVKGRMSEK ERSRDGAVGK MITRGGSGPG GPTGLVVLYS VPVDKHACGA TKFPLPFIPH 300 LSFSTH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-26 | 174 | 233 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019152292.1 | 1e-113 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q9SB61 | 9e-70 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A1U8AKJ6 | 2e-80 | A0A1U8AKJ6_NELNU; zinc-finger homeodomain protein 1-like | ||||
STRING | XP_010266504.1 | 4e-81 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-66 | homeobox protein 22 |
Publications ? help Back to Top | |||
---|---|---|---|
|