PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000117.1_g00030.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 377aa    MW: 41104.1 Da    PI: 6.8394
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000117.1_g00030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.8e-19297331135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Itr_sc000117.1_g00030.1 297 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 331
                              *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.873291327IPR000679Zinc finger, GATA-type
SMARTSM004012.4E-15291345IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.85E-14293354No hitNo description
Gene3DG3DSA:3.30.50.101.6E-14295329IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.03E-14296345No hitNo description
PfamPF003209.6E-17297331IPR000679Zinc finger, GATA-type
PROSITE patternPS003440297322IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MLYPTSHHSH FSPLSSLSLL PPPPPSSLQA VMECVELGAI KSFFRPQAAL KITHQQGYLE  60
NEFAAACNGQ AGAGAISGDD LFVDELLNLS NEFVEAEEKK EEEEKVDEKP VEKREECVEN  120
LSVTLASVSP QKGEREAEAV SFPVTDDFAS VPGSELSVPT DDLDNLEWLS HFVEESFSDE  180
YSLTCPAGKL LPLPSEKNNH LSRSETPVQG KPSFISPVQT KARTKRARTG VRVWPVGAPP  240
SFTESSASSS SSSSSSSTTT LSSSPPNRWF LDQLIGKPLA KKPNKPSMHS AQQSRRCSHC  300
GVQKTPQWRA GPLGAKTLCN ACGVRFKSGR LLPEYRPACS PTFSRELHSN NHRKVLEMRR  360
KKEAETGPGL GSPVQSF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177136.11e-171PREDICTED: GATA transcription factor 5-like isoform X2
SwissprotQ9FH577e-67GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A1S3Y4M41e-106A0A1S3Y4M4_TOBAC; GATA transcription factor
TrEMBLA0A1U7VAA21e-106A0A1U7VAA2_NICSY; GATA transcription factor
STRINGXP_009761911.11e-107(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-64GATA transcription factor 5