PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000115.1_g00045.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | bHLH | ||||||||
Protein Properties | Length: 194aa MW: 22012.5 Da PI: 7.5728 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23 | 1.4e-07 | 30 | 81 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C.....TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as..kapskKlsKaeiLekAveYIksL 54 + +Er+RR +++ +L +l+P+ + + + ls + L +A YIk L Itr_sc000115.1_g00045.1 30 KTVERKRRIHMKYLCGKLVSLIPPhHFypSKQESVLSQQDQLDQAATYIKAL 81 679*********************66695555555***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.045 | 24 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.2E-9 | 29 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-9 | 30 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.52E-4 | 32 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MEDLVEKGDL MDMMEEKMST GGVSEKPDRK TVERKRRIHM KYLCGKLVSL IPPHHFYPSK 60 QESVLSQQDQ LDQAATYIKA LRERVEKLEK MKKKKMSWGE EEEEEEKSAT SAAGCTLLKS 120 PVIEVRDLGS TLEVVLMSAT NKPNLMLHQL IRIVEEEGAQ VETASFSTVG DKVKVARLGM 180 ETSRVYGRLK QLIT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019152554.1 | 3e-88 | PREDICTED: uncharacterized protein LOC109149300 isoform X1 | ||||
TrEMBL | A0A1S4C717 | 3e-55 | A0A1S4C717_TOBAC; uncharacterized protein LOC107815812 | ||||
STRING | XP_009618665.1 | 9e-54 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6083 | 14 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-15 | bHLH family protein |