PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000114.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 448aa    MW: 50685 Da    PI: 5.8047
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000114.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.7e-36141042101
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+ye+++d+++++++sw++ng+sfvv+++ efa ++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F 
  Itr_sc000114.1_g00004.1  14 FLTKTYELVDDPSTNHIVSWHQNGRSFVVWNPPEFACELLPKYFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANEEFI 90 
                              9***************************************************************9998.........********* PP

                              XXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkk 101
                              +g+++ll++i+r++
  Itr_sc000114.1_g00004.1  91 RGQTHLLKNIHRRR 104
                              ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-39598IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.61E-3610103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.9E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDGTQSGSNA PAPFLTKTYE LVDDPSTNHI VSWHQNGRSF VVWNPPEFAC ELLPKYFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANEEFI RGQTHLLKNI HRRRPIHSHS GQGNSVAPLN  120
DSERQGFEEE IERLKHENSF LQSEVERREQ ENQEYKLEFQ SMEHRLLKVD QRQRRLVALL  180
GQISQKPTFA STLMQQLDTH NKKRRLSISN SLYDEDNIGD NQFLSFQKGP GSGSTAHLPQ  240
LSYELVAKLD SSINFCENVL HGISKTPGED VYEFSALPRP SPIIETEMQA RSGDSEVNVR  300
PCSLHSQPSS TSRDMCSSPE LAGSSSHTGT PEISSIFPNL ESRHNPSGID VNTSPASTLE  360
PTILKDKVEG SSSTSMPNGG NDVFWQQFLT ETPTPGCSDR QEVESERRET VGRKYDSQLA  420
ESHRPWWNTI NIEHLTEGMG HLSPMTGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25310319129Heat shock factor protein 1
5d5v_B2e-25310319129Heat shock factor protein 1
5d5v_D2e-25310319129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158879.10.0PREDICTED: heat stress transcription factor A-4b-like
TrEMBLA0A2R6QBW41e-165A0A2R6QBW4_ACTCH; Heat stress transcription factor A-4b like
STRINGXP_010242159.11e-149(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.19e-77heat shock transcription factor A4A