PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000111.1_g00057.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 295aa    MW: 32516.6 Da    PI: 6.5151
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000111.1_g00057.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-1338102147
                              TSSS-HHHHHHHHHHHHHTTTT...................-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...................tWktIartmgkgRtlkqcksrwqky 47 
                              r +WT+eE++++++a ++l ++                   +Wk+I   +g  +t  q++s+ qky
  Itr_sc000111.1_g00057.1  38 RESWTEEEHDKFLEALQLLSTPlppssiyifwpyslflfdrDWKKIEDFVG-SKTVIQIRSHAQKY 102
                              789************************************************.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.34E-1332108IPR009057Homeodomain-like
PROSITE profilePS500906.00533103IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-636108IPR009057Homeodomain-like
SMARTSM007171.0E-637105IPR001005SANT/Myb domain
PfamPF002497.1E-1038102IPR001005SANT/Myb domain
CDDcd001673.11E-640103No hitNo description
TIGRFAMsTIGR015571.7E-776105IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0032922Biological Processcircadian regulation of gene expression
GO:0043966Biological Processhistone H3 acetylation
GO:0046686Biological Processresponse to cadmium ion
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MTSASSNSQS MANPSNSSTP TDGSGKKVRK PYTITKSRES WTEEEHDKFL EALQLLSTPL  60
PPSSIYIFWP YSLFLFDRDW KKIEDFVGSK TVIQIRSHAQ KYFLKVQKNG TIAHVPPPRP  120
KRKASHPYPQ KAPKNVLLPL PGSMAYPSSV NPLAPGYPSW DETSMLVNAS TSGMMPPEDE  180
FNVHGVEADV GSKGAARIGN SDVGEIGSSN RTVPNQSKLG SVLHGLPDFA EVYSFIGSVF  240
DPDTSFHELK LKEMDPINLE TVSVGTDETS SYLFNDYAYY VTGGWKCVHI SCEIS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00338DAPTransfer from AT3G09600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4552066e-32AM455206.2 Vitis vinifera contig VV78X069637.42, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184918.11e-164PREDICTED: protein REVEILLE 8 isoform X1
SwissprotQ8RWU32e-99RVE8_ARATH; Protein REVEILLE 8
TrEMBLA0A2G3BG261e-125A0A2G3BG26_CAPCH; Protein REVEILLE 6
STRINGSolyc10g084370.1.11e-123(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-102MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Fogelmark K,Troein C
    Rethinking transcriptional activation in the Arabidopsis circadian clock.
    PLoS Comput. Biol., 2014. 10(7): p. e1003705
    [PMID:25033214]
  4. Xing H, et al.
    LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.
    Plant Signal Behav, 2015. 10(3): p. e1010888
    [PMID:25848708]
  5. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]