PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000111.1_g00023.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 391aa MW: 42556.9 Da PI: 10.1256

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000111.1_g00023.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.7	4.7e-16	60	144	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf....erspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +W++ v L+ea++ ++ +r+klk+++We+v++++++rg ++++qCk+k+e+++kry+ + +++ + s++p++ Itr_sc000111.1_g00023.1 60 EWSEGAVSSLLEAYEAKWVLRNRAKLKGQDWEDVARHVSARGNspksAKTQTQCKNKIESMKKRYRSESATAADA-----SSWPLY 140 5***********************************66664322268899**************99984.....57** PP trihelix 83 dqle 86 ++l+ Itr_sc000111.1_g00023.1 141 SRLD 144 9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-19	58	144	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MRGGMDTLQE PANNNNSSKE NPSLLSNGGT NPKQESPRSM ATAANTTAVV AASDRLKRDE 60 WSEGAVSSLL EAYEAKWVLR NRAKLKGQDW EDVARHVSAR GNSPKSAKTQ TQCKNKIESM 120 KKRYRSESAT AADASSWPLY SRLDLLLRGN NAPSHQPPPA LLPPPPPPPP PPPPQPTSRV 180 ANAPFIMAPE PPLLTPPPPP PAPPPSLVVP LGNAGHHSHG SDGYIRGAKE DVMQEKLSEN 240 MASEKNMATD TDSISTPALY RNEKEEAKEA AAAANKLRSS TERMKNKRRK RSLGGGGGGR 300 DRNWEVAESI RLLAEVVART EEARTEAMRE VERMRAEAEL KRGEMELKRT EIIANTQLEI 360 AKLFASCLAS NNNNNTNNKG VVDPSLRIGR S

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MRGGMDTLQE PANNNNSSKE NPSLLSNGGT NPKQESPRSM ATAANTTAVV AASDRLKRDE  60
WSEGAVSSLL EAYEAKWVLR NRAKLKGQDW EDVARHVSAR GNSPKSAKTQ TQCKNKIESM  120
KKRYRSESAT AADASSWPLY SRLDLLLRGN NAPSHQPPPA LLPPPPPPPP PPPPQPTSRV  180
ANAPFIMAPE PPLLTPPPPP PAPPPSLVVP LGNAGHHSHG SDGYIRGAKE DVMQEKLSEN  240
MASEKNMATD TDSISTPALY RNEKEEAKEA AAAANKLRSS TERMKNKRRK RSLGGGGGGR  300
DRNWEVAESI RLLAEVVART EEARTEAMRE VERMRAEAEL KRGEMELKRT EIIANTQLEI  360
AKLFASCLAS NNNNNTNNKG VVDPSLRIGR S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019185327.1	0.0	PREDICTED: FH2 domain-containing protein 1
TrEMBL	A0A1S4BA19	1e-117	A0A1S4BA19_TOBAC; trihelix transcription factor ASIL2-like
STRING	XP_009593617.1	1e-118	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12251	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	8e-64	sequence-specific DNA binding transcription factors