PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000107.1_g00038.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 682aa    MW: 75300.7 Da    PI: 9.3958
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000107.1_g00038.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07583632147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                              r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Itr_sc000107.1_g00038.1 583 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 632
                              678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.285578637IPR017930Myb domain
SMARTSM007171.2E-7582635IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-10583633IPR009057Homeodomain-like
CDDcd116607.61E-17584634No hitNo description
SuperFamilySSF466891.35E-15584665IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYRVPPMP RSTRSARKRG VNWRKAEDGQ MCAFDLLATV AGKLLLEGES  60
SSQSLEKGSV DREKQSLERD SVDREKRNED RIMQEKPGNR GSCERNFFLS ELVSQAPVFS  120
NFSYELPNAR NDSLSPKSVI TTSDSSDKFA PVEQLVNSGS KLELGSGGVS GCKVFSSCKL  180
GNGVAKPRKH EVLNNGKVSS DTKAGMCSSS AVLWDRKPSS TFVCSDNSVK LTLSKDHIPC  240
GSFPASRGNV KLGNRDDDEN SSVCTQPSTA NKAFEPALPR KLLASEYCEV NPKSNDEERR  300
NADVETKPAL GNKKNNLKCE RSLRDYPFKK RKLYDCSSVS NSNSDRAISN EGNCSSHTKG  360
YNEDASNYTP PTAQKTAGTS TSAPGGCAFF RTGDSQVKLR IKSFRVPELF IERTVMEAVT  420
AILGGGLHVG VLFQGKKIRD DNKTLLQTGI SRDDKPDTLG FSLEPIPPKA SSPPPCPEER  480
PYLLSCDTPQ PLRRYSPSRS MVHNVVQQGP ADTLRDSPGT NLINFIESDH DSAPSPPDTS  540
LDKSAAAEDS RALVPVPAVN MEPHDAVPVR KPKRSEAAQR RIRRPFSVSE VEALVQAVEK  600
LGTGRWRDVK LRAFDNAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLIAH  660
AYWSQQQAKQ QMKQQAETCL LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-555706734107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322331LRDYPFKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178710.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X2
TrEMBLM0ZPY10.0M0ZPY1_SOLTU; Uncharacterized protein
STRINGSolyc06g005590.2.10.0(Solanum lycopersicum)
STRINGPGSC0003DMT4000054760.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-122TRF-like 2