PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000104.1_g00023.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 312aa    MW: 35571.7 Da    PI: 5.8753
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000104.1_g00023.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind94.21.4e-29421332102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl k+ye+++d+ ++++isws++g+sf+v+++  +a+++Lp++F+hsnf+SF+ QLn YgF+k+  ++         we+++ +F+
  Itr_sc000104.1_g00023.1  42 FLIKTYEMVDDPLTNHIISWSHSGDSFIVWNHLILASDILPRFFRHSNFSSFIYQLNNYGFRKIGLQR---------WEYENVWFQ 118
                              9***************************************************************9999.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +gkk+ll +ik +++
  Itr_sc000104.1_g00023.1 119 AGKKHLLMNIKSRHH 133
                              ***********9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-3136126IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.62E-2837130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-4138131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-174265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-2542130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-178092IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-1793105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MANMGGGSAL WEGGIGGGGG DGVWPSSKTK VRGLHGSSPP PFLIKTYEMV DDPLTNHIIS  60
WSHSGDSFIV WNHLILASDI LPRFFRHSNF SSFIYQLNNY GFRKIGLQRW EYENVWFQAG  120
KKHLLMNIKS RHHKLRKMAQ RGSLECQYEM KEELEILRDD QNVITAEMQK LKQMQEDMQS  180
QMCAFKNHVK MVETKSREEL TVLAKAMNKV MMKEVLKYVR EGKEQKLDLQ GSGEMLKSGE  240
GKDEIIEMDT SESSKSSAAE TGKDKAEEEQ QKKEVKLDDL MISKMIMDEA EDVIAKTTSL  300
EEEEVVVVNL EL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-183713124129Heat shock factor protein 1
5d5v_B2e-183713124129Heat shock factor protein 1
5d5v_D2e-183713124129Heat shock factor protein 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162122.10.0PREDICTED: heat stress transcription factor A-7a-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13740910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-54heat shock transcription factor A2