PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000103.1_g00055.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 328aa    MW: 35328.2 Da    PI: 9.5695
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000103.1_g00055.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.42.8e-29163218258
                CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                               p++VN+KQy++I++RR++Rak+e  + +  ksrkpylh SRh hA+rRpRg+gGrF
  Itr_sc000103.1_g00055.1 163 GPIFVNPKQYHGIIRRRKSRAKAEMANVV-PKSRKPYLHLSRHLHAMRRPRGCGGRF 218
                              69***********************8877.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.2E-33160221IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.83161221IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.6E-21164186IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-26164218IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.6E-21195218IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTMHSVISKE NEGMVQNPIA ISPTTVPWWG GITVQSASCV ETLGHLMALS VEQPASGDQA  60
IGGKQVGRGV EQQLPKGNTG QFAIVPGDCK SSANLQKFSQ VQGAASVQPA SVEYRGPFEF  120
GFGQPLICTK YPYGEQCYRL YTAYGPQVAG RIMLPLNLTS NEGPIFVNPK QYHGIIRRRK  180
SRAKAEMANV VPKSRKPYLH LSRHLHAMRR PRGCGGRFLN TGNAKGSCKD SSGNTKTAAE  240
GQISPISEVL QSDSSRNLSS PGSHNFGSEV TSLFSREDQD LDPFPTTRLR SPLLALPDLM  300
NAGHSILTAP GKWMVSAAAA DNCCNLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A2e-16162219260HAPB protein
4g92_A2e-16162219260HAPB protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019187066.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1
RefseqXP_019187067.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1
TrEMBLA0A2R6QVS91e-110A0A2R6QVS9_ACTCH; Nuclear transcription factor Y subunit A-10 like
STRINGPGSC0003DMT4000550611e-103(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.27e-48nuclear factor Y, subunit A10