PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000100.1_g00040.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 370aa    MW: 42259.3 Da    PI: 8.4846
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000100.1_g00040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.41.5e-14145234198
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f+k ++ps+v    +l lpk f++ + + ++ ++ ++l de+g++++  +  ++++    l++GW+ F  +++L  gD+++F+l++
  Itr_sc000100.1_g00040.1 145 FIKCMLPSNVAHGFWLHLPKAFCDIY-L-PTFDTNIILVDEWGNEYKTSYLLERHG----LSAGWRAFSISHRLLKGDILIFRLIE 224
                              89*********************666.3.467889***************777776....***********************997 PP

                              SSEE..EEEEE- CS
                       B3  87 rsefelvvkvfr 98 
                                +  l+v ++r
  Itr_sc000100.1_g00040.1 225 PCK--LKVDIVR 234
                              443..5888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-19137236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-22138236IPR015300DNA-binding pseudobarrel domain
CDDcd100173.81E-21143234No hitNo description
PfamPF023622.2E-11145234IPR003340B3 DNA binding domain
PROSITE profilePS5086311.561145236IPR003340B3 DNA binding domain
SMARTSM010192.3E-16145236IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
METKHSNVKQ RTDSQICSHK VRISHSLSTS TPAASSSKTK RKMPLESKEK LVSKKPKILK  60
SKAKQVKYLS RLCFCFKDLR CFELGLMENH LEQSMLDWLF GAMNVSIKRK RATVSDMYDD  120
VEAKFSVLER AERVLSSLSD EFPSFIKCML PSNVAHGFWL HLPKAFCDIY LPTFDTNIIL  180
VDEWGNEYKT SYLLERHGLS AGWRAFSISH RLLKGDILIF RLIEPCKLKV DIVRVNGRDV  240
VHAALCLLKF DASENTRDPD LSRKDTRKRK SLVKFIEPYI HDVCKPEANV QDEGQSALDC  300
CSPHIVDQAE HNSKDSGSED FEGSDIANHP QSNEFCSSKT SFLCDHPRDG HRSRKTQQRA  360
KDYLGEENLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265270TRKRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165219.10.0PREDICTED: B3 domain-containing protein At5g42700-like
TrEMBLA0A1S4DQM91e-112A0A1S4DQM9_TOBAC; B3 domain-containing protein At5g42700-like isoform X1
STRINGXP_009772548.11e-109(Nicotiana sylvestris)
STRINGXP_009612758.11e-109(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-31B3 family protein