PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000100.1_g00027.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 418aa MW: 47074.3 Da PI: 8.3694

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000100.1_g00027.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	36	1.6e-11	260	289	1	30
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPk 30 k+r++W+p+LH+rF++a++qLGG++ + Itr_sc000100.1_g00027.1 260 KQRRCWSPDLHKRFINALQQLGGPQGCSIR 289 79*********************9966544 PP
2	G2-like	52	1.6e-16	316	346	26	56
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRla 56 +AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Itr_sc000100.1_g00027.1 316 VATPKQIRELMQVEGLTNDEVKSHLQKYRLH 346 79***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-26	257	285	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-7	260	285	IPR006447	Myb domain, plants
SuperFamily	SSF46689	7.77E-7	315	349	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-13	316	346	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.4E-26	317	350	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MDFISPLDSR PPVVLRTITE FLREISMIGN VSEKVERIDD RVRRLEDEMR KIDAFKRELP 60 LCMVLLNDVI IVLKEESKKC RKSLVEPVFE EFLPLKKSSG DDDLDRHYKV ETNKEDTKEK 120 INWVSSLQLW NGDSGCSHSD RSNNKHSLEY DLRMSAEGEG NSSVANDFPM SFKRRNINKA 180 FVPFKGCSGF PVKVVRKDHQ EELPGEPGLS LSTPGITNRR EDMVIGDFSS KPSRVVPSSA 240 SSTVTNIKAR AQPQQQTSRK QRRCWSPDLH KRFINALQQL GGPQGCSIRQ LIAAESVKTI 300 SMVVKPEMHP FWFFAVATPK QIRELMQVEG LTNDEVKSHL QKYRLHTRRI PTTQSSPANK 360 SIVVLGNLFP VDEYGESSKQ SSSQSGSPQG TLQLAASSRG TSMTGSDSME EDGDDRSE

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MDFISPLDSR PPVVLRTITE FLREISMIGN VSEKVERIDD RVRRLEDEMR KIDAFKRELP  60
LCMVLLNDVI IVLKEESKKC RKSLVEPVFE EFLPLKKSSG DDDLDRHYKV ETNKEDTKEK  120
INWVSSLQLW NGDSGCSHSD RSNNKHSLEY DLRMSAEGEG NSSVANDFPM SFKRRNINKA  180
FVPFKGCSGF PVKVVRKDHQ EELPGEPGLS LSTPGITNRR EDMVIGDFSS KPSRVVPSSA  240
SSTVTNIKAR AQPQQQTSRK QRRCWSPDLH KRFINALQQL GGPQGCSIRQ LIAAESVKTI  300
SMVVKPEMHP FWFFAVATPK QIRELMQVEG LTNDEVKSHL QKYRLHTRRI PTTQSSPANK  360
SIVVLGNLFP VDEYGESSKQ SSSQSGSPQG TLQLAASSRG TSMTGSDSME EDGDDRSE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165310.1	0.0	PREDICTED: myb family transcription factor EFM-like isoform X1
TrEMBL	A0A0V0I6V0	1e-126	A0A0V0I6V0_SOLCH; Putative two-component response regulator-like APRR2-like
STRING	Solyc01g108300.2.1	1e-125	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4361	24	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	2e-46	G2-like family protein