PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000100.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 441aa    MW: 49116.3 Da    PI: 7.6251
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000100.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.94.8e-1512103299
                              EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                              f++ ++ +v+ +++l++p  f+e++g+    s +++l+  +g +W v+l  +k ++++++t+GW++F +   +  g f++F ++++
  Itr_sc000100.1_g00016.1  12 FSQIITRSVSDQSQLRIPDGFVERYGHY--LSGEVKLTVHTGDEWCVRL--KKVGKTVLFTDGWRKFMEYYSIGIGYFLLFIYTKS 93 
                              6788999******************966..7779***************..99999***************************998 PP

                              SEE..EEEEE-S CS
                       B3  88 sefelvvkvfrk 99 
                               +f   v++f+k
  Itr_sc000100.1_g00016.1  94 ACF--DVHLFNK 103
                              888..8888876 PP
2B353.64.1e-173464231496
                              T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                       B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                                l +p++f++e+  +   +k + ++d++g+sW++k+   +k+  ++l+kGW  Fv++++L +gD + F+l++  ++ +lv+kv
  Itr_sc000100.1_g00016.1 346 IVLHIPREFTKEYLPI--IPKNVEVQDSEGNSWNIKC--INKP--CFLSKGWAAFVREKNLAAGDACGFELIKYlQDDNLVFKV 423
                              4579*********533..5678***************..8998..67***********************88776666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-209104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-219103IPR015300DNA-binding pseudobarrel domain
CDDcd100178.09E-1810102No hitNo description
PROSITE profilePS5086312.74611104IPR003340B3 DNA binding domain
SMARTSM010191.5E-1212104IPR003340B3 DNA binding domain
PfamPF023622.0E-1212103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-23325428IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-22327427IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-22331427No hitNo description
SMARTSM010195.0E-14332429IPR003340B3 DNA binding domain
PROSITE profilePS5086313.578333429IPR003340B3 DNA binding domain
PfamPF023621.2E-15346423IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MRTLPCASSP CFSQIITRSV SDQSQLRIPD GFVERYGHYL SGEVKLTVHT GDEWCVRLKK  60
VGKTVLFTDG WRKFMEYYSI GIGYFLLFIY TKSACFDVHL FNKTATEIWD LPSTNANAER  120
STHISQDLQF TKEKCVGISD CGGSDDGNRS VKQLDDLKCH QVQENLADLS GLGSGCKRQR  180
AATGWVNVQS SYRTRGKGKM FGEEGSISDA ENVPDDGYSN EPLFAKSLLG SESRHNNDSA  240
GLIVENANNQ QISGKKGTLV SDDGKSDTAD RLSPIFPNCK TDGEGSNIIQ EKKRRSVSSK  300
SSSKLIMQRQ ATAQEKERAS RDAKMFAPNN PYFTVSLKEY NISGSIVLHI PREFTKEYLP  360
IIPKNVEVQD SEGNSWNIKC INKPCFLSKG WAAFVREKNL AAGDACGFEL IKYLQDDNLV  420
FKVHIFRAVL DNANEISLVE V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1830842724141B3 domain-containing transcription factor VRN1
4i1k_B2e-1830842724141B3 domain-containing transcription factor VRN1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165351.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-20B3 family protein