PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000100.1_g00015.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 129aa MW: 14788.7 Da PI: 4.7168

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000100.1_g00015.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.3	6.7e-19	24	106	11	98
HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 l+++ l++p f++eh + + ee ++l+ + g +W vkl +++ ++ +l++GWk+F ++n Lke++f++F++dg + f v Itr_sc000100.1_g00015.1 24 LTTDFLRIPPCFVKEHlE-EDEE--SVVLKGdSGGGTWHVKL--ERNEDGLFLRQGWKDFHRDNSLKENEFLLFRYDGAMVF--SV 102 456779********54.4445..4888884666***..*******************************99999..88 PP EEE- CS B3 95 kvfr 98 ++f+ Itr_sc000100.1_g00015.1 103 RIFK 106 8886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-25	8	107	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.1E-23	10	107	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.48	14	108	IPR003340	B3 DNA binding domain
CDD	cd10017	3.22E-20	14	106	No hit	No description
SMART	SM01019	5.0E-18	16	108	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.4E-16	25	106	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MEKKESEEIT TEGPSFFQIV KAPLTTDFLR IPPCFVKEHL EEDEESVVLK GDSGGGTWHV 60 KLERNEDGLF LRQGWKDFHR DNSLKENEFL LFRYDGAMVF SVRIFKVTGL ERDVQQPLIP 120 PQTASSSQG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00517	DAP	Transfer from AT5G18090	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A200QJ56	2e-26	A0A200QJ56_9MAGN; B3 DNA binding domain
STRING	Aquca_009_00893.1	2e-24	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3779	22	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18090.1	5e-17	B3 family protein