PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000098.1_g00032.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 647aa    MW: 70202 Da    PI: 6.8098
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000098.1_g00032.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41.1e-07246266526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C+ f + GtC  Gd C FaHg
  Itr_sc000098.1_g00032.1 246 PCPEFKK-GTCGKGDACEFAHG 266
                              8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.11E-1435134IPR020683Ankyrin repeat-containing domain
PfamPF127964.3E-943125IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00125787IPR002110Ankyrin repeat
PROSITE profilePS5029715.67157132IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.2E-1658179IPR020683Ankyrin repeat-containing domain
CDDcd002041.95E-1359137No hitNo description
SMARTSM002484.9E-492124IPR002110Ankyrin repeat
PROSITE profilePS5008811.94292127IPR002110Ankyrin repeat
PROSITE profilePS5010312.69241268IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5241267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-5245267IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-5246266IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.15276300IPR000571Zinc finger, CCCH-type
SMARTSM0035625276299IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MGKKDGFFCE SCSKLLELSA ADDVVGFIGE VEGKGCDVNE LSLWYGRRIG SRKMGLEERS  60
PLMIASMYGS VEVLKYIVQT GKVDVNMACG SDGATALHCA VAGGSEAAAE VVKILVDASA  120
DVNCVDASGN KPCSLYAPNS KFLGGWSKRR TLELLKGEVA DEEDGEEKTV APLVKEGSDK  180
KEYPIDTSLP DINNGIYGTD EFRMYSFKIK PCSRAYSHDW TECPFVHPGE NARRRDPRKY  240
TYSCVPCPEF KKGTCGKGDA CEFAHGIFES WLHPAQYRTR LCKDETGCSR KVCFFAHKPE  300
ELRPLYASTG SAIPSPKSVS VSSMDMATLS PLALGSSSLL LSTTSTPPMS PTVSCSSPMW  360
QNKMNFTPPT LQLPGSRLKT ALNARDLDLE MELLSLESIR SQQQHRQQLV DEMAGLSSPS  420
HWNKDYNRLG DFKPTNLDDV LGSLDSPLAS QLQCLSPKLT IATASQLQSS SLSQLQSSQL  480
QSPTGLQMRQ NMNQLRASYP TTLSSSPARK TSSYGYDSSA AVAAAVMNSR SAAFAKRSQS  540
FIDRSHHAAN SPALGASSLS DWSSPGGKLD WGFNGDDLNK LKRSASFGIR GANAAAASNR  600
TPITPHANEP DVSWVHSLVK DVSRGGPHDP NPSWIDQMYI EQEQMVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192217.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
RefseqXP_019192218.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
RefseqXP_019192219.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
RefseqXP_019192220.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A3Q7HFW60.0A0A3Q7HFW6_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000698880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-170C3H family protein