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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000094.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | CO-like | ||||||||
Protein Properties | Length: 418aa MW: 45327.5 Da PI: 4.7429 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.6 | 3.9e-06 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +C+ ++e++ + +C+++ +lC +C + H+ H Itr_sc000094.1_g00016.1 4 MCEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsrrHP 43 6*****************************5556666665 PP | |||||||
2 | zf-B_box | 18.6 | 3.8e-06 | 46 | 87 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C++++ +++ C + ++ lC++C ++H + H++ Itr_sc000094.1_g00016.1 46 LVCERCNAQPAFVRCIEERVSLCQSCDWAGHVSsstgstHKR 87 58*****************************66677788876 PP | |||||||
3 | CCT | 62.5 | 1.3e-21 | 361 | 404 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a+lRYkeK+ktR FeK++rY+sRKa+A+ R RvKGrFvk+ Itr_sc000094.1_g00016.1 361 RSDAVLRYKEKKKTRTFEKHVRYASRKARADVRRRVKGRFVKAG 404 889**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.357 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.39E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 1.9E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.731 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.93E-4 | 47 | 88 | No hit | No description |
SMART | SM00336 | 1.9 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.852 | 361 | 403 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.8E-16 | 361 | 403 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MGYMCEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSR RHPRTLVCER CNAQPAFVRC 60 IEERVSLCQS CDWAGHVSSS TGSTHKRQAV SCYSGCPSAA ELSSMWSFLL DFPSVGDSTC 120 EQGMGSMSIT ENCPRDSQGP EGKNVAQDVS AVDDASAMKA ENESNIWMAP SVLTVDNKLQ 180 SVELPTGATI PTNSTSPKVC YSGAKGPSFY EDDPFNMDFN VDEVDISMEN YEELFGMSLN 240 EGIDDFFGTK DMPAADSSCQ GANAVEVVVI LNSVCPGASL GQVNAMQPAC SNAASADSMM 300 SCKTEPNFCF ARQQSSLSFS NITGESSGGD YQDCGVSSML LMGEPPWGPS GPENSFPSSS 360 RSDAVLRYKE KKKTRTFEKH VRYASRKARA DVRRRVKGRF VKAGDAYDYD PLSPTRSY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019194500.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Refseq | XP_019194501.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Refseq | XP_019194502.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Refseq | XP_019194503.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Swissprot | Q9LUA9 | 1e-132 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A1S3Z9K5 | 0.0 | A0A1S3Z9K5_TOBAC; zinc finger protein CONSTANS-LIKE 9-like | ||||
TrEMBL | A0A1U7VPN6 | 0.0 | A0A1U7VPN6_NICSY; zinc finger protein CONSTANS-LIKE 9-like | ||||
STRING | XP_009768363.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1270 | 24 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-120 | CONSTANS-like 9 |
Publications ? help Back to Top | |||
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