PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000090.1_g00030.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARR-B
Protein Properties Length: 546aa    MW: 58774.4 Da    PI: 4.7859
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000090.1_g00030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like742.1e-23232285155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              k++++Wt + H  F++a+++L G+e+AtPk+il++m+v+gLt+e+v SHLQkYR 
  Itr_sc000090.1_g00030.1 232 KKKMVWTDKFHFIFLDAISSL-GPENATPKNILKAMNVPGLTRENVGSHLQKYRQ 285
                              689******************.********************************5 PP
2Response_reg55.33.8e-1910118326108
                              EEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHH CS
             Response_reg  26 vaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelv 108
                              v + ++g +a+e l+++  +D+++ D+ mpgm+G+el + i ++  ++p++++++  ee  + +a++ Ga  f+ Kp++p++l+
  Itr_sc000090.1_g00030.1 101 VVALKNGNDAIEALQTQGgFDVVISDVHMPGMNGFELQQLIFQQF-RIPVVLMSGDCEEGIVRQAMQNGAISFIRKPVSPNDLR 183
                              66889*********99999**********************7766.7**********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.6E-27228No hitNo description
PROSITE profilePS5011025.475190IPR001789Signal transduction response regulator, receiver domain
SMARTSM004482.0E-1181186IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.6E-27100196No hitNo description
SuperFamilySSF521723.42E-24101196IPR011006CheY-like superfamily
PfamPF000724.7E-16101183IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.60E-20101183No hitNo description
PROSITE profilePS5129410.596229288IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-22230289IPR009057Homeodomain-like
SuperFamilySSF466891.0E-15230289IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-20232285IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MASLKVLVVD DDSTCLAIVA ALLVKMEFQG MVSWLFSILS GPFKFRAWSV YLPCFSGHFL  60
RFDFGNSGRV PCTCRAIRGS IQSAANLFSS TIFSPISVIL VVALKNGNDA IEALQTQGGF  120
DVVISDVHMP GMNGFELQQL IFQQFRIPVV LMSGDCEEGI VRQAMQNGAI SFIRKPVSPN  180
DLRGIWQYII AQKRSKVTTE QVNTGDQDDV DIGGSSSGTG THLYSGYDTT SKKKMVWTDK  240
FHFIFLDAIS SLGPENATPK NILKAMNVPG LTRENVGSHL QKYRQFLRRN IQDIENRNNG  300
GGGHQPRFGS RKFRRLAKLE EMFAQGGLGA ALSSPTSSAA LGRSSAGGDA RTRGGRGGSS  360
ERGQQGVLLS EDDESMFYRG LRRAPIVTSP NESSPASHEV NPGGSIESGP YPTLTALMQN  420
RLDSSSNGDN ANVSGFGNVN VVSGNEDVQI PGEGNFDIYD AILNFIGETE DGGDENISMY  480
GNITAGQDNS GNNQIGNLSN DFLNQVNINQ TYTPNQGDGD DDDDAFVNSL YGPNPYGGAA  540
GNGEDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-16232288157Transcription factor LUX
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.18e-36response regulator 2