PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000090.1_g00019.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 275aa    MW: 30717.5 Da    PI: 9.4642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000090.1_g00019.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-1399151155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              +r +h e+Er+RR+++ + ++ Lr+llP       ++K s ++   +A +YIk++q
  Itr_sc000090.1_g00019.1  99 KRIMHREIERQRRQEMATLYASLRSLLPLeY---VKGKRSTSDHMHEALNYIKQMQ 151
                              799**************************77...9*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1497166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-997155No hitNo description
PROSITE profilePS5088813.68198150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1099151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1199166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-6104156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MFPLQRNEDL VFQILSTPDI PSQQNKISQD LIFDNNNNNY GFSPLDFATG AHHHDFAAAA  60
AVTASSPRKR RRREKTLAAC TDDVAAAAAA KSDENHKLKR IMHREIERQR RQEMATLYAS  120
LRSLLPLEYV KGKRSTSDHM HEALNYIKQM QKNVQELEKR RDGLKTAGSS TSSSHNLEKT  180
GSPDQKTGSS PNFVSVGRCR DGVEILINSV AGERGCFPLS RVLRTLQNEG VNVVSCDSTK  240
ADTRLLHRVQ SEVSGEKSID IQALQQKLTE VINNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16771RKRRR
26974RRRREK
398110KRIMHREIERQRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019200203.11e-162PREDICTED: transcription factor bHLH36-like
TrEMBLA0A328E0905e-76A0A328E090_9ASTE; Uncharacterized protein
STRINGXP_009801441.11e-68(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.17e-43bHLH family protein