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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000085.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NF-YB | ||||||||
Protein Properties | Length: 176aa MW: 19937.2 Da PI: 5.1373 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 165 | 1e-51 | 22 | 118 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 +reqdr+lPianv+rimk++lPanakisk+aket+qecvsefi+fvt+eas+kc+rekrkt+ngdd++wal++lGf+dy+ pl++y Itr_sc000085.1_g00011.1 22 MREQDRLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFIGFVTGEASEKCRREKRKTLNGDDVCWALGSLGFDDYAPPLRTY 107 59************************************************************************************ PP NF-YB 87 lkkyrelegek 97 l++yr l+ e+ Itr_sc000085.1_g00011.1 108 LHRYRRLQVER 118 *****988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.1E-50 | 20 | 141 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.06E-38 | 25 | 146 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.3E-26 | 28 | 92 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 8.3E-15 | 56 | 74 | No hit | No description |
PRINTS | PR00615 | 8.3E-15 | 75 | 93 | No hit | No description |
PRINTS | PR00615 | 8.3E-15 | 94 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MDDNREGQNY SFSPGDDDGV LMREQDRLLP IANVGRIMKQ ILPANAKISK EAKETMQECV 60 SEFIGFVTGE ASEKCRREKR KTLNGDDVCW ALGSLGFDDY APPLRTYLHR YRRLQVERER 120 AEELKAAGNN GEMKALAEEP AADDDNYLKG EPAIIRYSSS ATTSVCHNSF QFHQFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-43 | 22 | 112 | 6 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019162118.1 | 1e-110 | PREDICTED: nuclear transcription factor Y subunit B-5 | ||||
Swissprot | O82248 | 1e-54 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | G7JKC3 | 4e-59 | G7JKC3_MEDTR; Nuclear transcription factor Y protein | ||||
STRING | Solyc06g009010.1.1 | 3e-58 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 4e-57 | nuclear factor Y, subunit B5 |
Publications ? help Back to Top | |||
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