PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000084.1_g00021.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 433aa MW: 49741.4 Da PI: 6.3735

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000084.1_g00021.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.7	1.8e-24	113	208	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 +Wt+q+v++Li+a+++++e+ +++ kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e++ Itr_sc000084.1_g00021.1 113 KWTDQMVRLLITAVSYIGEEASAEYggrrkcaniHKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVV 198 7************99999886433345567789*******************************************669999 PP trihelix 77 stcpyfdqle 86 ++ ++d ++ Itr_sc000084.1_g00021.1 199 ENPTLLDMMD 208 9999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.2E-22	111	234	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MEGNISSGNM IPGSSYGGLD LQGSMRVHHH QHQQQHPVGI HPHPRQGSMV HSQIHEGFPL 60 SIGSQNIGLS DYGKGEGGKS VSDDEEPSFT EDAGEGHNDQ NRGKKAPMWH RVKWTDQMVR 120 LLITAVSYIG EEASAEYGGR RKCANIHKKG KWKSVSKVMA ERGHFVSPQQ CEDKFNDLNK 180 RYKRLNEILG RGTSCEVVEN PTLLDMMDHI PEKAKDEVKK ILSSKHLHYE EMCSYHNGNR 240 LHLPPDPDLQ RSLRLALRTR DDNDDNDVRR PPHDDNDDDD LDAELDEHDE YEENHNLPVD 300 HRMYGIQGGP AKKSKPNACF GSSSSPLDCN KSLSFQPQNA NAEANLMSPD DLKDHNLQKR 360 WMDQRSLQLE EQKLHIQAQM LELEKERFKW QRFSQKKNFD LEMMRMENER MKLENERMAL 420 ELKQKEMLAD NNS

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MEGNISSGNM IPGSSYGGLD LQGSMRVHHH QHQQQHPVGI HPHPRQGSMV HSQIHEGFPL  60
SIGSQNIGLS DYGKGEGGKS VSDDEEPSFT EDAGEGHNDQ NRGKKAPMWH RVKWTDQMVR  120
LLITAVSYIG EEASAEYGGR RKCANIHKKG KWKSVSKVMA ERGHFVSPQQ CEDKFNDLNK  180
RYKRLNEILG RGTSCEVVEN PTLLDMMDHI PEKAKDEVKK ILSSKHLHYE EMCSYHNGNR  240
LHLPPDPDLQ RSLRLALRTR DDNDDNDVRR PPHDDNDDDD LDAELDEHDE YEENHNLPVD  300
HRMYGIQGGP AKKSKPNACF GSSSSPLDCN KSLSFQPQNA NAEANLMSPD DLKDHNLQKR  360
WMDQRSLQLE EQKLHIQAQM LELEKERFKW QRFSQKKNFD LEMMRMENER MKLENERMAL  420
ELKQKEMLAD NNS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019152907.1	0.0	PREDICTED: uncharacterized protein LOC109149549
Refseq	XP_019152908.1	0.0	PREDICTED: uncharacterized protein LOC109149549
TrEMBL	A0A068UNC0	0.0	A0A068UNC0_COFCA; Uncharacterized protein
STRING	XP_009590352.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7600	18	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-132	sequence-specific DNA binding transcription factors