PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000083.1_g00037.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 333aa    MW: 36857.4 Da    PI: 7.6596
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000083.1_g00037.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-18248281134
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              Cs+C++ kTp+WR gp g+ktLCnaCG++y++ +
  Itr_sc000083.1_g00037.1 248 CSHCQVQKTPQWRTGPMGPKTLCNACGVRYKSGR 281
                              *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-821330IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.609242278IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-14242292IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-14246279IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.28E-14246305No hitNo description
CDDcd002028.35E-14247295No hitNo description
PfamPF003202.9E-16248281IPR000679Zinc finger, GATA-type
PROSITE patternPS003440248273IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MECIEARAFK SSALKKIAMK SNQQGFFDDV WCLTGLNNVV CDDFSVDDLL DFSDKDFSDS  60
RSCLDSEEVE GRQSGFSLVS PHHRNYNSQT FSGTEDFGSL STGQFLLPVD DMENLEWLSR  120
IVDDSSSELS LFCPNPSFQP ATGAFLESRR EPVIIQAAQN IKPPLPVPVQ RKPRSKRSRL  180
SGKVWSYVAS ESSSPSSSYG SSSLPGANPV HDGDLFSSVE KPPAKKLKRK PSVEAGLGSG  240
VTQTLRRCSH CQVQKTPQWR TGPMGPKTLC NACGVRYKSG RLFPEYRPAC SPTFSLEMHS  300
NSHRKVLEMR RKKEDTEVID AGSITPALVE NFQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165447.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH573e-62GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A484KKJ61e-127A0A484KKJ6_9ASTE; GATA transcription factor
STRINGSolyc01g110310.2.11e-119(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.29e-59GATA transcription factor 5