PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000083.1_g00029.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family BBR-BPC
Protein Properties Length: 310aa    MW: 34831 Da    PI: 9.7526
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000083.1_g00029.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind327.34.5e-10013101301
                GAGA_bind   1 mdddgsre.rnkg.yye.........paaslkenlglqlmss...iaerdakirernlalsekkaavaerdmaflqrdkalaernk 72 
                              mdd g+++ r++   y+         +++++ke ++  lm +    aerda+i+e++ al+ekkaa+ erdm  +qrd+a+aer++
  Itr_sc000083.1_g00029.1   1 MDDGGQENrRQRMdCYRgghpqwsmvSQQQMKE-QNAFLMNMkmlFAERDAAIEEQDRALAEKKAAIEERDMVIQQRDAAIAERDN 85 
                              999999997666678889999998885568884.4444544311145*************************************** PP

                GAGA_bind  73 alverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakk 158
                              al erdn+++al+++en+++ al      +sgtk+  +l +++ ++++ s  ++r++  ++a pi+   +e+ +++++k+ + +++
  Itr_sc000083.1_g00029.1  86 ALRERDNAIAALQFQENNMSGAL---GYRISGTKHPSHLTTHRGNNFQSS-GNTRDTPVTDAVPISAVSSEVVKAQQRKQAKVSRS 167
                              *****************977665...345788888888887555666544.44577888888888887777777777665555555 PP

                GAGA_bind 159 pkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243
                              + +k  ++++k++++  ++ +++ + + skae++ ++l  +n++++Dest+P+PvC+CtG++rqCYkWGnGGWqS+CCtt++S yP
  Itr_sc000083.1_g00029.1 168 NSTKSLDSPRKTKRV-SEDLNRHVTTDGSKAEWDAQNLgFINQINFDESTMPTPVCTCTGVPRQCYKWGNGGWQSSCCTTSLSEYP 252
                              555555555553333.3444444445669*********669********************************************* PP

                GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                              LP+ +++r+ RiagrKmS+++f++lL +L++ G+dls+p+DLk++WAkHGtn+++ti+
  Itr_sc000083.1_g00029.1 253 LPQLPHKRHGRIAGRKMSGSVFSRLLTRLSSGGHDLSTPLDLKNYWAKHGTNRYITIK 310
                              *********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012268.4E-1271310IPR010409GAGA-binding transcriptional activator
PfamPF062174.3E-921310IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDDGGQENRR QRMDCYRGGH PQWSMVSQQQ MKEQNAFLMN MKMLFAERDA AIEEQDRALA  60
EKKAAIEERD MVIQQRDAAI AERDNALRER DNAIAALQFQ ENNMSGALGY RISGTKHPSH  120
LTTHRGNNFQ SSGNTRDTPV TDAVPISAVS SEVVKAQQRK QAKVSRSNST KSLDSPRKTK  180
RVSEDLNRHV TTDGSKAEWD AQNLGFINQI NFDESTMPTP VCTCTGVPRQ CYKWGNGGWQ  240
SSCCTTSLSE YPLPQLPHKR HGRIAGRKMS GSVFSRLLTR LSSGGHDLST PLDLKNYWAK  300
HGTNRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165433.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X1
RefseqXP_019165434.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X1
RefseqXP_019165435.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X1
SwissprotQ8S8C61e-103BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A1S3XSA21e-161A0A1S3XSA2_TOBAC; protein BASIC PENTACYSTEINE4-like
TrEMBLA0A1U7YRN91e-161A0A1U7YRN9_NICSY; protein BASIC PENTACYSTEINE4-like
STRINGXP_009804621.11e-162(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92872128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-105basic pentacysteine 4