PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000082.1_g00026.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family DBB
Protein Properties Length: 297aa    MW: 31968.7 Da    PI: 5.8864
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000082.1_g00026.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.41.9e-05447542
                 zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                              C+ +e  e++  C  ++  lC +C  + H        H++vpl
  Itr_sc000082.1_g00026.1  4 QCNVCEVAEANVLCCADEAALCWSCDAKVHAAnklaskHQRVPL 47
                             7*****999*********************66899999999986 PP
2zf-B_box31.63.4e-105395238
                 zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                              ++kC+ ++e    +fC +++ llC++C +++Hk       H+
  Itr_sc000082.1_g00026.1 53 PMPKCDICQETVGYFFCLEDRALLCRNCDVAIHKAnayvsaHQ 95
                             689********9*********************8766666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.367147IPR000315B-box-type zinc finger
CDDcd000219.29E-7347No hitNo description
SMARTSM003361.5E-9447IPR000315B-box-type zinc finger
SuperFamilySSF578459.06E-54694No hitNo description
PROSITE profilePS501199.1435299IPR000315B-box-type zinc finger
SMARTSM003361.8E-155299IPR000315B-box-type zinc finger
PfamPF006436.7E-85395IPR000315B-box-type zinc finger
CDDcd000212.39E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKIQCNVCEV AEANVLCCAD EAALCWSCDA KVHAANKLAS KHQRVPLSGS SSPMPKCDIC  60
QETVGYFFCL EDRALLCRNC DVAIHKANAY VSAHQRFLLT GVKAGLESIE AGPSPSSGNS  120
QSGEKVLETQ SRSVSRTNAP GPSDHQYNKV PPVQISGIGD LAPTKAQLGG SATVNVSQWQ  180
VEEFLALGDL DQNYCYMDNN SSKQAGSGKV GGSDCSSVLK VNEKEPDGDD CLGQVPEAPW  240
AVPQIPSPST ASGLYWPKTY RNPFDTAVFV PDVCYTPLQN PHHEQPNSTS SKRQRQY
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158949.10.0PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM23e-92BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A068UCQ51e-146A0A068UCQ5_COFCA; Uncharacterized protein
STRINGXP_009762543.11e-144(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.19e-91light-regulated zinc finger protein 1