PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000081.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 537aa    MW: 60086.8 Da    PI: 6.8519
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000081.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.24.5e-119871799
                             E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3 17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                              lp +f+ ++   ++   ++++ led+ g + + ++  + + g+  + +GW++F  +++++ gDfvv++l++   +++vv+++ +
  Itr_sc000081.1_g00020.1  9 FLPPTFV-KYvsHLV---GQEIYLEDSIGVKSKATV--SYCNGTLAINQGWSQFSLDHNVERGDFVVLHLIKGPVGHFVVHIYGR 87
                             5899999.5544333...559***************..55556689*************************9999999**99876 PP
2B341.32.7e-134505181184
                              HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                       B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                               +++ l lp +   ++ ++  e+k + l+d+++r+W   +  +kk++  vlt+GWk+F+ an+Lk g  +vF+ 
  Itr_sc000081.1_g00020.1 450 DRQDFLELPDSWP-KIRSQ--ENKIIFLKDPTNRVWPTLY--QKKKQLRVLTGGWKDFCVANELKPGHECVFQA 518
                              5566677777776.56555..5679***************..9999999***********************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.361188IPR003340B3 DNA binding domain
SMARTSM010190.0013688IPR003340B3 DNA binding domain
SuperFamilySSF1019361.49E-14990IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-8987IPR003340B3 DNA binding domain
CDDcd100171.26E-101085No hitNo description
Gene3DG3DSA:2.40.330.104.5E-111090IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.306440532IPR003340B3 DNA binding domain
CDDcd100171.68E-12445516No hitNo description
SMARTSM010190.004445532IPR003340B3 DNA binding domain
PfamPF023625.1E-11451518IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-13454527IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-13454520IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MPQLNLLQFL PPTFVKYVSH LVGQEIYLED SIGVKSKATV SYCNGTLAIN QGWSQFSLDH  60
NVERGDFVVL HLIKGPVGHF VVHIYGRSGC LKTNFDESSE RSNKRARTIR SLPEQEAAEI  120
NSMNKERSPT CFATMPGFGN NHHQLPTITH TPIIDVDSGS KQSSPLVMQF EESFYMTGQD  180
TGYNQEENRM HLFDLSSFEM PAFRHAEGNN NFSEGKSDPL DLVQQVGQSE KDTMSLNDLV  240
TTEGEAYHSP GRIHMDSNGT SHFDEKMKPK EKDLMEVRAQ GVTQPRSEMP ASRPAERKRI  300
LIGDKEAIEH VESEVIFLKE KSSKESITPC KNNKGPCTGS AQMAKAECGA KESITPCKNN  360
KGPCTGSAQM ARPVCCAKDT ITSYKDKKTP CIGNVQMARA EHCGASDVDT GNELNTRSKS  420
YTRVKSEPVD LTDSPILAAP SNDSFLVMVD RQDFLELPDS WPKIRSQENK IIFLKDPTNR  480
VWPTLYQKKK QLRVLTGGWK DFCVANELKP GHECVFQAKE FPHYSVDITP WQRNQAA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190094.10.0PREDICTED: B3 domain-containing protein Os01g0905400-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352