PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000080.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family AP2
Protein Properties Length: 517aa    MW: 56884.1 Da    PI: 7.8729
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000080.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-17144193155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Itr_sc000080.1_g00004.1 144 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 193
                              78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-15144202IPR016177DNA-binding domain
PfamPF008474.3E-9144193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-17145201IPR001471AP2/ERF domain
SMARTSM003807.4E-32145207IPR001471AP2/ERF domain
PROSITE profilePS5103217.425145201IPR001471AP2/ERF domain
CDDcd000181.65E-23145200No hitNo description
CDDcd000181.76E-15236349No hitNo description
Gene3DG3DSA:3.30.730.102.1E-11237258IPR001471AP2/ERF domain
SMARTSM003801.6E-20237353IPR001471AP2/ERF domain
PROSITE profilePS5103212.998237347IPR001471AP2/ERF domain
PRINTSPR003679.0E-6238249IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-8290348IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-11311348IPR001471AP2/ERF domain
PRINTSPR003679.0E-6329349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MLLEDLNVDA VFYMDSACDE VDPDPCGRPA RSVTAADDSA SSSSVVNADE PPDESNSSSP  60
STLAFSILKT SEVIEVEEGG SVGATRQLLP ATREPFFSSS QNWLKLSAPE TGRGAEMGVY  120
EPPPYPQPIQ PIKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHSA  180
ARAYDRAAIK FRGVDADINF LLSDYEEDMK QMKNLSKEEF VQILRRQSTG FSRGSSKYRG  240
VTLHRCGRWE ARMGQLLGKN SIGSWVTNCG QERKIQPLHS RSMGVSPYCG VFLIGNLLGP  300
YMFIYKIIML GCRYMYLGLY NSEVEAARAY DKAAIKCYGR EAMTNFESSA YEGEMNKNSR  360
DGGTICPMDV GTNASLDLNL WISPPLDGPK RPENPRKLQF NFEARDLSLL KRMKVECTPG  420
TPYGPAMASQ YSRWPGLQSA LTPNNEEGLM GMNAEASSPV FSNLRWLSQG VAPSAPQFSS  480
AASSGFSITA TSMFKFPSAA PPPSAASQNH LTTLSPN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2168630.0EF216863.2 Ipomoea nil APETALA2-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019198848.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X3
SwissprotB8AXC32e-84AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A328DAL60.0A0A328DAL6_9ASTE; Uncharacterized protein
STRINGXP_008463879.11e-113(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-82related to AP2.7