PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000079.1_g00093.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 354aa MW: 40238.2 Da PI: 9.8593

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000079.1_g00093.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.6	4.6e-18	154	243	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +k +++s+v + +l lp +f+e+h + +++++++lede+g ++e +i ++++ l++GW+ F+ +++L++gD +vF l++ Itr_sc000079.1_g00093.1 154 VKSMVRSHVYSCFWLGLPTRFCENHL-P-KSTVDIVLEDEEGAEYEAVYISKRTG----LSGGWRAFALDHKLDDGDALVFDLVEP 233 6899****************8884.3.3779************544444....*********************9876 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++f +v ++r+ Itr_sc000079.1_g00093.1 234 TKF--KVYIVRA 243 666..8888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-21	145	246	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.1E-24	147	247	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.21E-26	151	242	No hit	No description
SMART	SM01019	9.9E-24	153	244	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.098	153	244	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.7E-16	154	243	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MVGGTALRLQ SMANDNSTNS YEEARKQRVL DNKKRFEDLG ISKISKSLSD LAKSEKKSPA 60 KQLKVRQKRN EVYMLEPRRS SRARNPVPSY RDEVKIDVEL LSFRKRSKLG SSWASYLARP 120 IEEVKTASYE ERCKALKEAE ELQSNLQSEN PSLVKSMVRS HVYSCFWLGL PTRFCENHLP 180 KSTVDIVLED EEGAEYEAVY ISKRTGLSGG WRAFALDHKL DDGDALVFDL VEPTKFKVYI 240 VRASHCSSQG DEETKDETAK RRKKRDAQSR DSTKSQEKEV PSVVEETKNE TTKSRKRRNT 300 QSSDSTKSQK EIPNIAEETK EDTQSKDSTK LQKEAPLVAS ATRRSARLLS CRSG

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MVGGTALRLQ SMANDNSTNS YEEARKQRVL DNKKRFEDLG ISKISKSLSD LAKSEKKSPA  60
KQLKVRQKRN EVYMLEPRRS SRARNPVPSY RDEVKIDVEL LSFRKRSKLG SSWASYLARP  120
IEEVKTASYE ERCKALKEAE ELQSNLQSEN PSLVKSMVRS HVYSCFWLGL PTRFCENHLP  180
KSTVDIVLED EEGAEYEAVY ISKRTGLSGG WRAFALDHKL DDGDALVFDL VEPTKFKVYI  240
VRASHCSSQG DEETKDETAK RRKKRDAQSR DSTKSQEKEV PSVVEETKNE TTKSRKRRNT  300
QSSDSTKSQK EIPNIAEETK EDTQSKDSTK LQKEAPLVAS ATRRSARLLS CRSG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019178749.1	0.0	PREDICTED: putative B3 domain-containing protein At5g58280 isoform X1
Swissprot	Q9FHB2	2e-72	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	A0A1S3YNZ1	1e-137	A0A1S3YNZ1_TOBAC; putative B3 domain-containing protein At5g58280
STRING	XP_009590905.1	1e-139	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12510	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	8e-75	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]