PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc000079.1_g00088.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 160aa MW: 17779.6 Da PI: 7.2431

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000079.1_g00088.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.9	1.7e-38	12	108	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+C+k C++ pyfp ++p++fa+vh++FGasn++k+l+++p + r da+ s+vyeA ar+rdP+yG+vg+i+ lq++ Itr_sc000079.1_g00088.1 12 PCAACKLLRRRCTKYCIFLPYFPPTHPERFAAVHQIFGASNITKMLQEVPVDSRADAVMSMVYEATARLRDPIYGCVGLISVLQKN 97 7*********************************************************************************** PP DUF260 87 leqlkaelall 97 + +l+++l++ Itr_sc000079.1_g00088.1 98 VFELQSKLNES 108 ***999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.943	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-39	12	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MMSSSSNKNS MPCAACKLLR RRCTKYCIFL PYFPPTHPER FAAVHQIFGA SNITKMLQEV 60 PVDSRADAVM SMVYEATARL RDPIYGCVGL ISVLQKNVFE LQSKLNESVA ETMALKTQLS 120 SVLSASLLYD PALPDTMLLT SDLSNSSQPT EFFNPEPYIV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-42	10	113	9	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-42	10	113	9	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019178781.1	1e-103	PREDICTED: LOB domain-containing protein 12-like isoform X1
Swissprot	Q8LBW3	1e-46	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A314LGR4	2e-59	A0A314LGR4_NICAT; Lob domain-containing protein 4
STRING	Solyc06g082770.2.1	1e-59	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-48	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]