PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000078.1_g00025.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 535aa    MW: 59567.1 Da    PI: 6.114
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000078.1_g00025.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.18e-41237314178
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                              +Cqv+gC+ dls+ k+yh+rhkvC+ hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q 
  Itr_sc000078.1_g00025.1 237 VCQVHGCNRDLSSSKDYHKRHKVCDEHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDDKRSCRKRLAGHNERRRKPQR 314
                              6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.7E-33233299IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.923235312IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.06E-38236316IPR004333Transcription factor, SBP-box
PfamPF031105.2E-32238311IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MESLNYAFEG RGFLFSDSGI ELPVDSFTRS RNLLKDWNLN PFSDVDRGMI STNHELNEGA  60
EFMESGLAEM LQKSPVSSPG LRLSSTESDN DFGKMTLSSC VANLDSVPRE MEVEARFGYN  120
NEKSSQISSK SEEFMNHGNV KSDQSSKSSS VLSPMEPSLP AKRIRDTNLQ SDVHAFQVHD  180
INKAALNDSK EARSGQSSKK TSDSSSAEPK NSDLSSAEPS VTAKRARITS FSPQVLVCQV  240
HGCNRDLSSS KDYHKRHKVC DEHSKTAKVI VNGIEQRFCQ QCSRFHLLAE FDDDKRSCRK  300
RLAGHNERRR KPQRDTHWDI PGSRFLDLAS DRTISFLFPE ILNGSFFCQE SYEDEGKPIC  360
SLLQSRGLLN AMQKTEPPKG HLRETFPIQE LPGGENSTRS HSLLSAHKEK ILSNSTIHPT  420
MIASSHPGYL EKNLAMPLGM NTSGNFTLGE LDAFGVVDRD GVLEAHDGNL GARYETQMDG  480
SLQTSDSMDL TCYISPESGP TIDLQQLSTH LLRVEQQRSY AQVNHDSDNF CFTTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-28229311284squamosa promoter binding protein-like 4
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180610.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_019180611.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_019180612.10.0PREDICTED: squamosa promoter-binding-like protein 6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68311933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.12e-49SBP family protein