PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000077.1_g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | TCP | ||||||||
Protein Properties | Length: 255aa MW: 26970.3 Da PI: 10.5223 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.9 | 3.7e-38 | 33 | 125 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s ++s+s + Itr_sc000077.1_g00020.1 33 VKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStVSVSVRNSSS--TT 116 79******************************************************************88832222222222..11 PP TCP 88 g.......k 89 + + Itr_sc000077.1_g00020.1 117 SpsisaplD 125 111212221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-34 | 38 | 126 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.675 | 38 | 92 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSTSAEANGA IIDPKQRQQQ QQQPPPSNGA LVVKKPPAKD RHSKVDGRGR RIRMPIVCAA 60 RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTIPA SFSTVSVSVR NSSSTTSPSI 120 SAPLDQKPSH SLISSAPFIL GKRLRSEEDG LDGGGNKDDV AGTATVVGPT AGFWAIPPRP 180 DFGQVWSFAA APHEMVVPTP ALNSHPSRFL QQQMGEASAA RVGNYLPIAQ GHLNLLASLS 240 GPPPPSSGRR DDDGR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019187993.1 | 1e-146 | PREDICTED: transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 2e-93 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | G3BGV4 | 1e-130 | G3BGV4_SOLLC; TCP transcription factor 14 | ||||
STRING | Solyc04g009180.1.1 | 1e-130 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3951 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 8e-82 | TCP family protein |