PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000075.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 313aa    MW: 35243 Da    PI: 7.5073
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000075.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.42.4e-1524115186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                              +W+++ + +L++a  ++  +l+rg+l+ ++W++v++++     + ++ +r+ +qCk++++ l+k+yk++k+   +     + st+p
  Itr_sc000075.1_g00010.1  24 CWSEEATATLVDAWGRRFMELNRGNLRHKDWQDVADAVnelhgHTKKGRRTDVQCKNRIDTLKKKYKAEKAKIVESdGTLTASTWP 109
                              7*************************************99988888889*******************999866653477888*** PP

                 trihelix  81 yfdqle 86 
                              +f++l+
  Itr_sc000075.1_g00010.1 110 FFSRLD 115
                              ***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-2522116No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGEMTDSLTA TAPSSRPLPF REDCWSEEAT ATLVDAWGRR FMELNRGNLR HKDWQDVADA  60
VNELHGHTKK GRRTDVQCKN RIDTLKKKYK AEKAKIVESD GTLTASTWPF FSRLDVLIGN  120
SGKQQQQFPK VSPLIAASAS TLPLPLPSPS PSPLLLSLPS PPIAVPLAYR WPTPAVAKPV  180
FLPQKRPLPS MDDSYFRRNY SAMAAAAAAA ATEDKDANEE DGREESEEEM EASEGTKEED  240
GIRRLAKAIE RFGAIYERVE GMKRRQMIEL EKQRMEFAKD LELQRMQLIM DTQVQLVKNK  300
QAKRPSSDGL WDQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019157389.11e-164PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A328DGT01e-118A0A328DGT0_9ASTE; Uncharacterized protein
TrEMBLA0A484K7R31e-118A0A484K7R3_9ASTE; Uncharacterized protein
STRINGXP_009757835.11e-113(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.14e-33sequence-specific DNA binding transcription factors