PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000071.1_g00054.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 455aa    MW: 49939.7 Da    PI: 5.809
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000071.1_g00054.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00176481219
                             EETTTTEEESSHHHHHHH CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                             +C++Cgk F ++ ++  H
  Itr_sc000071.1_g00054.1 64 VCENCGKEFFSWKSFLEH 81
                             6*************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552806383IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.53E-56485No hitNo description
SuperFamilySSF576674.53E-5188215No hitNo description
PROSITE profilePS5015710.221193220IPR007087Zinc finger, C2H2
SMARTSM003550.13193215IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-9193217IPR007087Zinc finger, C2H2
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
SuperFamilySSF576673.08E-5266292No hitNo description
SMARTSM003550.52269291IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328269291IPR007087Zinc finger, C2H2
PfamPF139129.9E-13269292IPR007087Zinc finger, C2H2
PROSITE patternPS000280271291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MCGRALGGHM RAHGIGDDSA TMEDEDQASD WDEKMNDNNG GERTSFKRMY QLRANPNRLK  60
SVRVCENCGK EFFSWKSFLE HGKCSSDDAE SLVSDDGDED FGRKGAGWSK RKRSFRAAKL  120
GNFASNSSED EDIILAKCLI DLANARVEAA AEQEAESSAA AAAVFLAPLA AATRPRVDYK  180
AKGTASSSSK GLFECKACKK VFTSHQALGG HRASHKKVKG CYAAKQDQID DVIGGGDDDV  240
TTHDDFFPPS KTSSYLHQFE PSRRKSKDHE CSICHRVFST GQALGGHKRC HWITSAANSN  300
SNNSYSPETS TPKFHFHHQE QPKSLDLNLP AGDDITAAGG IIRRDPRNPF SFEVSTDIHL  360
RPFSMDNDRN HPYPPNNDDN NDYYNNDNNI IIDEHQKIAA ANVDDVYEDD EADSNNKVEL  420
AKLSGMKEMS SINKGSDSPW LQVGIGSTAE VGADS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158800.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A328DPP41e-151A0A328DPP4_9ASTE; Uncharacterized protein
STRINGXP_009785654.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.18e-28C2H2-like zinc finger protein