PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000071.1_g00031.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRF

Protein Properties

Length: 424aa MW: 47258 Da PI: 8.9897

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000071.1_g00031.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.3	6.3e-24	113	157	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+ v++ +k+CErH+hrg++rsrk +e+ Itr_sc000071.1_g00031.1 113 DPEPGRCRRTDGKKWRCSKSVVPHEKYCERHMHRGSNRSRKLVEA 157 79****************************************997 PP
2	WRC	54.1	2.7e-17	311	346	2	37
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrs 37 +ep+rC R+DGKkWRC+r ++g+k+C Hlhrg+ Itr_sc000071.1_g00031.1 311 TEPLRCFRSDGKKWRCKRASVPGHKYCGMHLHRGSR 346 79*******************************954 PP
3	QLQ	40.4	9.3e-15	45	79	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT aQ+++L Q+ ++Ky+ ++PvP +L+++i++ Itr_sc000071.1_g00031.1 45 FTEAQWNELYLQAVIFKYIQCGLPVPFHLVLPIWR 79 *********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.6E-5	43	79	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	17.39	44	79	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.8E-10	45	78	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.76	113	157	IPR014977	WRC domain
Pfam	PF08879	3.9E-20	114	156	IPR014977	WRC domain
PROSITE profile	PS51667	19.302	310	355	IPR014977	WRC domain
Pfam	PF08879	1.3E-14	312	347	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MHASIEKDGS PSLKLVLGYE GSGHVKIEQK DREEEEEEEE RKCGFTEAQW NELYLQAVIF 60 KYIQCGLPVP FHLVLPIWRT VSTSFDTTVF FRQQFSGFRD LNAWGFGDMS MMDPEPGRCR 120 RTDGKKWRCS KSVVPHEKYC ERHMHRGSNR SRKLVEASQT ESKSRINPAS KYDRPLNLEP 180 KPKFLSATKA SIGSPSNGVN GHIDSPFSTM EANRFCTNNG KHNSSSVHGV DPNLVRTIAP 240 SESHNIRGRS DNIDGKYAMF NPKETNQMSG KRNTSQSYVF VPGLGMFPRS GHEHGTGSSS 300 SGIPQNRLAE TEPLRCFRSD GKKWRCKRAS VPGHKYCGMH LHRGSRKITA PSNPVTVALP 360 PPSSTDRICP PLAIATRYID DGTSLNTNLS IAPASHQLVN CDSTHTSSSD STTITDETPT 420 FVMH

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MHASIEKDGS PSLKLVLGYE GSGHVKIEQK DREEEEEEEE RKCGFTEAQW NELYLQAVIF  60
KYIQCGLPVP FHLVLPIWRT VSTSFDTTVF FRQQFSGFRD LNAWGFGDMS MMDPEPGRCR  120
RTDGKKWRCS KSVVPHEKYC ERHMHRGSNR SRKLVEASQT ESKSRINPAS KYDRPLNLEP  180
KPKFLSATKA SIGSPSNGVN GHIDSPFSTM EANRFCTNNG KHNSSSVHGV DPNLVRTIAP  240
SESHNIRGRS DNIDGKYAMF NPKETNQMSG KRNTSQSYVF VPGLGMFPRS GHEHGTGSSS  300
SGIPQNRLAE TEPLRCFRSD GKKWRCKRAS VPGHKYCGMH LHRGSRKITA PSNPVTVALP  360
PPSSTDRICP PLAIATRYID DGTSLNTNLS IAPASHQLVN CDSTHTSSSD STTITDETPT  420
FVMH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019159209.1	0.0	PREDICTED: growth-regulating factor 9-like isoform X4

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7798	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	4e-30	growth-regulating factor 9