PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000070.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

BBR-BPC

Protein Properties

Length: 335aa MW: 37748.4 Da PI: 7.8836

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000070.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	324	4.5e-99	45	335	26	301
GAGA_bind 26 lqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtks 107 + m+++aerda+irern+al e+k a+aerdma lqrd+a+aern+a+ erd+++ al l+e s++ +++g +++ ++k+ Itr_sc000070.1_g00010.1 45 KTYMAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAAIAERNAAIQERDEAISALHLQESSMNdnnfVPESPGNRIVGEAKH 130 3469*******************************************************9999998765556678999** PP GAGA_bind 108 idslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.er...... 186 i+ q++++ ++ +a++ e+ +++ +++ ++e+ + +++++++++k +k+ ++ k++ e+ +++v + s+d ++ Itr_sc000070.1_g00010.1 131 IHYQQHMHH-IIDSTAYDPAETLTSDPSRVTDLTTENAKPRRVRQTKESKPMSAKRPRAGKRTAESLNRQVISTSDDcSNgndldn 215 7777666.4444444444444444444444444444433333333333333333333344344444444444444222555555 PP GAGA_bind 187 .....skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkk 267 ++ e + +l+ln++++Des++PvPvCsCtG+++ CYkWG+GGWqSaCCtt+iS+yPLP ++++r +R++grKmS+gaf+k Itr_sc000070.1_g00010.1 216 deernKQLETWKENLGLNQINFDESAMPVPVCSCTGTPQPCYKWGSGGWQSACCTTSISMYPLPLVSNKRYSRVGGRKMSGGAFSK 301 66555444555679********************************************************************** PP GAGA_bind 268 lLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 lL++LaaeGydls p+DLkdhWAkHGtn++ ti+ Itr_sc000070.1_g00010.1 302 LLNRLAAEGYDLSVPLDLKDHWAKHGTNRYSTIK 335 *******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	5.8E-113	18	335	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	7.0E-88	41	335	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MEISPVSTAK VETKIPEEKR SHRNNQILDG FPNLLMMDHN NLTIKTYMAI MAERDAAIRE 60 RNMALEERKR AFAERDMAML QRDAAIAERN AAIQERDEAI SALHLQESSM NDNNFVPESP 120 GNRIVGEAKH IHYQQHMHHI IDSTAYDPAE TLTSDPSRVT DLTTENAKPR RVRQTKESKP 180 MSAKRPRAGK RTAESLNRQV ISTSDDCSNG NDLDNDEERN KQLETWKENL GLNQINFDES 240 AMPVPVCSCT GTPQPCYKWG SGGWQSACCT TSISMYPLPL VSNKRYSRVG GRKMSGGAFS 300 KLLNRLAAEG YDLSVPLDLK DHWAKHGTNR YSTIK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019182935.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
TrEMBL	A0A1U7XIZ5	1e-160	A0A1U7XIZ5_NICSY; barley B recombinant-like protein D
TrEMBL	H1ZN84	1e-160	H1ZN84_TOBAC; GAGA-binding transcriptional activator
STRING	XP_009789611.1	1e-161	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8062	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	2e-86	basic pentacysteine 6