PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000069.1_g00078.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 203aa MW: 22050.5 Da PI: 6.526 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 3e-17 | 26 | 73 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 + y+GVr ++ +g+Wv+eIr p++ + r++lg++ tae+Aa+a++ a + Itr_sc000069.1_g00078.1 26 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTYPTAEMAARAHDVAVVA 73 68*****998.**********843...6*******************99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.6E-12 | 26 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-35 | 27 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 27 | 85 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.55 | 27 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-30 | 27 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.08E-29 | 28 | 86 | No hit | No description |
PRINTS | PR00367 | 1.4E-10 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MQGKNRKNKN RNKDKDKNKE SGNRHPVYRG VRMRSWGKWV SEIRQPRKKS RIWLGTYPTA 60 EMAARAHDVA VVAIKGDSTL LNFPHLLGSL PRAASASPGD VQAAAAQAAA MEELNPLSSS 120 AAAAAESATT SAASDDLGEI IQLPNLDEEG SFDSSEPKAA VDRWVYPPWW LPDDDLCGNF 180 LNEPAGGETV NPASFETLNW AAH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-18 | 22 | 85 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019193752.1 | 1e-104 | PREDICTED: ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q9M080 | 3e-47 | ERF43_ARATH; Ethylene-responsive transcription factor ERF043 | ||||
TrEMBL | A0A484M3P2 | 8e-67 | A0A484M3P2_9ASTE; Uncharacterized protein | ||||
STRING | Solyc06g066540.1.1 | 3e-66 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 1e-38 | ERF family protein |
Publications ? help Back to Top | |||
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