PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ERF

Protein Properties

Length: 203aa MW: 22050.5 Da PI: 6.526

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000069.1_g00078.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.5	3e-17	26	73	1	52
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 + y+GVr ++ +g+Wv+eIr p++ + r++lg++ tae+Aa+a++ a + Itr_sc000069.1_g00078.1 26 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTYPTAEMAARAHDVAVVA 73 68***998.******843...6*****************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	8.6E-12	26	70	IPR001471	AP2/ERF domain
SMART	SM00380	2.4E-35	27	90	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-21	27	85	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.55	27	84	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-30	27	85	IPR001471	AP2/ERF domain
CDD	cd00018	7.08E-29	28	86	No hit	No description
PRINTS	PR00367	1.4E-10	28	39	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-10	50	66	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MQGKNRKNKN RNKDKDKNKE SGNRHPVYRG VRMRSWGKWV SEIRQPRKKS RIWLGTYPTA 60 EMAARAHDVA VVAIKGDSTL LNFPHLLGSL PRAASASPGD VQAAAAQAAA MEELNPLSSS 120 AAAAAESATT SAASDDLGEI IQLPNLDEEG SFDSSEPKAA VDRWVYPPWW LPDDDLCGNF 180 LNEPAGGETV NPASFETLNW AAH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	9e-18	22	85	9	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019193752.1	1e-104	PREDICTED: ethylene-responsive transcription factor ERF039-like
Swissprot	Q9M080	3e-47	ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBL	A0A484M3P2	8e-67	A0A484M3P2_9ASTE; Uncharacterized protein
STRING	Solyc06g066540.1.1	3e-66	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	1e-38	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]