PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000069.1_g00074.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 844aa    MW: 93048.6 Da    PI: 6.5043
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000069.1_g00074.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.3e-191673457
                             -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Itr_sc000069.1_g00074.1 16 YVRYTPEQVEALERVYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73
                             6789****************************************************97 PP
2START172.72.4e-541593672205
                              HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECT CS
                    START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetleviss 87 
                              +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++   v+e+l+d++ W ++++++++++v+ +
  Itr_sc000069.1_g00074.1 159 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPS-RVAEILKDRPSWYRDCRAVDVVNVLPT 243
                              789*******************************************************.8888888888****************9 PP

                              T..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
                    START  88 g..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwv 167
                              +  g+++l +++l+a+++l+p Rdf+ +R++  +++g++v++++S+ + q+ p+    +++vRae+lpSg+li+p+++g+s +++v
  Itr_sc000069.1_g00074.1 244 AngGTIELLYMQLYAPTTLAPaRDFWLLRFTSVMEDGSLVVCERSLGNVQNGPSmppVQNFVRAEMLPSGYLIRPCDGGGSIIHIV 329
                              999************************************************99988899*************************** PP

                              E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                    START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                              +h+++++++++++lr+l++s+++ ++kt++a+l+++++
  Itr_sc000069.1_g00074.1 330 DHMNVEAWSVPEVLRPLYESSAVLAQKTTMAALRQLRQ 367
                              **********************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6451074IPR001356Homeobox domain
SMARTSM003897.8E-161278IPR001356Homeobox domain
SuperFamilySSF466892.14E-171478IPR009057Homeodomain-like
CDDcd000862.48E-171575No hitNo description
PfamPF000461.6E-161673IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.0E-191773IPR009057Homeodomain-like
CDDcd146861.55E-667106No hitNo description
PROSITE profilePS5084824.309149364IPR002913START domain
CDDcd088755.77E-76153369No hitNo description
SMARTSM002341.4E-40158368IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-22158365IPR023393START-like domain
SuperFamilySSF559614.4E-37158370No hitNo description
PfamPF018528.6E-52159367IPR002913START domain
PfamPF086701.5E-49698843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MSISCKDGKS AVDGKYVRYT PEQVEALERV YHECPKPSSM RRQQLIRECP ILSNIEPKQI  60
KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR LQKQVSQLVY ENSYFRRQTQ  120
STGLATKDTS CESVVTSGQH QLTPQHPPRD ASPAGLLSIA EETLTEFLSK ATGTAVEWVQ  180
MPGMKPGPDS IGIIAISHGC TGVAARACGL VGLEPSRVAE ILKDRPSWYR DCRAVDVVNV  240
LPTANGGTIE LLYMQLYAPT TLAPARDFWL LRFTSVMEDG SLVVCERSLG NVQNGPSMPP  300
VQNFVRAEML PSGYLIRPCD GGGSIIHIVD HMNVEAWSVP EVLRPLYESS AVLAQKTTMA  360
ALRQLRQIAQ EVSQTNVTNW GRRPAALRAL SHRLSRGFNE ALNGFTDEGW SLLGNDGMDD  420
VTILVNSSPD KLMGLNLSYT NGFTSISNAV LCAKASMLLQ NVPPAVLLRF LREHRSEWAD  480
NNIEAYSAAA VKVGPCSLPG ARICNFGGQV TLPLAHTIEH EEARNSLLEV IKFEGIGHSP  540
EDAMMPRDMF LLQLCSGMDE NAVGTCAELI FAPIDASFAD DAPLLPSGFR IIPLDFGKES  600
SSPNRTLDLT SALETGTAEN KVLNDLNTNN SAARSVMTIA FQFAFESHMQ ENVAAMARQY  660
VRSIISSVQR VALALSPSHL GSHGGLRLPL GTPEAHIIAR WICQSYRCYL GVELLKSTGE  720
GNESILKTLW NHSDAIVCCS AKWIVQALPV FTFANQAGLD MLETTLVALQ DITLEKIFDD  780
HGRKSLCSEF PQIMQQGFAC LQGGICMSSM GRPVSYERAV AWKVLNEEES AHCICFMFIN  840
WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194412.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A484M5A50.0A0A484M5A5_9ASTE; Uncharacterized protein
STRINGXP_009593967.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]