PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000068.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family YABBY
Protein Properties Length: 150aa    MW: 17149.2 Da    PI: 10.4487
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000068.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY134.11.7e-413612183170
                    YABBY  83 ksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168
                              ++ + ++++ s+ + +++ +  +++  ++   v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihf
  Itr_sc000068.1_g00001.1  36 RMDYGSSSKYSNRMGMTMRPPITNR--TEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 119
                              2222222222222222222222222..222358***************************************************** PP

                    YABBY 169 gl 170
                              gl
  Itr_sc000068.1_g00001.1 120 GL 121
                              97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.9E-4114121IPR006780YABBY protein
SuperFamilySSF470952.09E-861114IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.109.3E-569115IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MAAAFQSLSS SSSSPSHWQD HHLHHQVPSY TSPEYRMDYG SSSKYSNRMG MTMRPPITNR  60
TEERIVNRPP EKRQRVPSAY NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG  120
LMLESNNQPK IGAAEGTGKH MTHRAALLNK
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191632.16e-96PREDICTED: axial regulator YABBY 5-like
SwissprotQ8GW465e-48YAB5_ARATH; Axial regulator YABBY 5
TrEMBLD7TC409e-68D7TC40_VITVI; Uncharacterized protein
STRINGVIT_11s0016g05590.t011e-68(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-48YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]