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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Itr_sc000065.1_g00030.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family |
RAV |
| Protein Properties |
Length: 366aa MW: 40791.9 Da PI: 9.7115 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000065.1_g00030.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 40.3 | 7.8e-13 | 62 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s++kGV + +grW A+I++ ++r++lg+f +eeAa+ ++ a+++++g
Itr_sc000065.1_g00030.1 62 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARVYDIAAQRFRG 110
689***9788.8*********3.....5*************************98 PP
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| 2 | B3 | 101.4 | 5.2e-32 | 189 | 289 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81
f+k+ tpsdv+k++rlv+pk+ ae+h g ++ +++ l +ed++g++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v
Itr_sc000065.1_g00030.1 189 FEKAVTPSDVGKLNRLVIPKQQAEKHfplqnGAVTSKGVLLNFEDTNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDIVS 274
89*****************************99999************************************************** PP
EEE-SSSEE..EEEE CS
B3 82 Fkldgrsefelvvkv 96
F+++ e++l++ +
Itr_sc000065.1_g00030.1 275 FHRSTGPEKQLYIDW 289
**8766777777766 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 366 aa
Download sequence Send
to blast |
MDASTPSSID ESSSSDSMSV ALNLPPATKS PESLCRMGSG ASVIIDAENG VEAESGRKLP 60
SSRFKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEEEAARV YDIAAQRFRG RDAVTNFKPL 120
SETTANGDDY EAVFLSSHSK AEIVDMLRKH TYADELEQSR RAFNINNNNN MSARKPEADR 180
SAKSRERLFE KAVTPSDVGK LNRLVIPKQQ AEKHFPLQNG AVTSKGVLLN FEDTNGKVWR 240
FRYSYWNSSQ SYVLTKGWSR FVKEKSLKAG DIVSFHRSTG PEKQLYIDWK PRNGTGSDIP 300
VHPVQVFRLF GVNILSKSST VVSPMAMAAM DTTNNISSCS GGKRIREVME FLPLECSKKQ 360
RVIDAL
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
| Publications
? help Back to Top |
- Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond.
Ann. Bot., 2014. 114(7): p. 1459-70
[PMID:24812253] - Marín-González E, et al.
SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
Plant Physiol., 2015. 169(2): p. 1214-24
[PMID:26243615] - Sun YW, et al.
Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
Sci Rep, 2015. 5: p. 16476
[PMID:26602265] - Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
Plant Sci., 2015. 241: p. 78-95
[PMID:26706061] - Matías-Hernández L, et al.
TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
Plant Physiol., 2016. 170(3): p. 1624-39
[PMID:26802039] - Li P, et al.
The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
Physiol Plant, 2017. 159(4): p. 416-432
[PMID:27747895]
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