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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000065.1_g00028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | G2-like | ||||||||
Protein Properties | Length: 391aa MW: 43048.2 Da PI: 6.5157 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.8 | 2.1e-32 | 240 | 295 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Itr_sc000065.1_g00028.1 240 KQRRCWSPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 295 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-29 | 237 | 298 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.875 | 237 | 297 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.71E-19 | 238 | 298 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.9E-28 | 240 | 295 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.8E-8 | 242 | 293 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MLISIHDPAA STNYPEKMRR CQEYIEALEE ERRKIQVFQR ELPLCLELVT QAIEAYKQEL 60 CGTRSGCNLN GQSECSEQIT SSDDEGPVLE EFIPLKRASS LSQEEEDDEQ QSPNKSTNHR 120 TDDDDDNINN NVDSSDYSSK DGKNSTDDKV SKKQDWLRSA QLWNQSFTDP TPKEESPSNC 180 KAAVMGVKRN GSGGAFHPFK REKSSAAVQT LVSTPAKTAD EGNGGGGSKK EEKETQSQRK 240 QRRCWSPELH RRFLQALQQL GGSHVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRPT 300 PSIRNNGSQQ GPQFVVVGGI WVPPPEYAAA MAAPATSGEA ATSNGIYAPI ATTPKQAQQN 360 GINHSEGGGA RRSDSPSTSY STHTTTTSHS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-13 | 240 | 293 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-13 | 240 | 293 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-13 | 240 | 293 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-13 | 240 | 293 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00160 | DAP | Transfer from AT1G25550 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019180082.1 | 0.0 | PREDICTED: myb family transcription factor EFM-like | ||||
Swissprot | Q9FPE8 | 1e-104 | HHO3_ARATH; Transcription factor HHO3 | ||||
TrEMBL | A0A2G9GW56 | 1e-139 | A0A2G9GW56_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_009038m | 1e-131 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5219 | 24 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25550.1 | 1e-92 | G2-like family protein |
Publications ? help Back to Top | |||
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