PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000063.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family G2-like
Protein Properties Length: 181aa    MW: 20041.1 Da    PI: 8.736
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000063.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like29.81.3e-0988112125
                  G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                              kpr +Wtp+LH+rF ea++ LGG +
  Itr_sc000063.1_g00002.1  88 KPRFKWTPDLHHRFYEAIQFLGGVQ 112
                              79*********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-786113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MAENFFPSSS SSSPSVPPSI EGGQSSSGPE NPTGTGFYPQ PTPRFKYGLF SVSSWRSAIE  60
FEVKLGKWLH CTPPRNHIST LMSDIQPKPR FKWTPDLHHR FYEAIQFLGG VQCKGDTMLF  120
RSAAYLSCRV VVKLPHSSSH FFCLVLAILA PESAIVTLPS PQIPLSEDKK AAGKMEVYFI  180
C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.22e-07G2-like family protein