 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Itr_sc000062.1_g00018.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 208aa MW: 23966.9 Da PI: 6.967 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000062.1_g00018.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.4 | 1.2e-18 | 60 | 112 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++++eq++ Le+ F ++++ + ++ +LA++lgL+ rqV vWFqNrRa++k
Itr_sc000062.1_g00018.1 60 KRKLSDEQVKLLEQSFWDEHKLETGRKDRLASELGLDPRQVAVWFQNRRARWK 112
45899***********************************************9 PP
|
| 2 | HD-ZIP_I/II | 119.1 | 2.4e-38 | 59 | 150 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87
+kr+ls+eqvklLE+sF e+kLe+ rK +la+eLgl+prqvavWFqnrRAR+k+k++E++y++Lk+++++ + e++rLe+ev +L
Itr_sc000062.1_g00018.1 59 RKRKLSDEQVKLLEQSFWDEHKLETGRKDRLASELGLDPRQVAVWFQNRRARWKSKRIEEEYSRLKSEHETAVVEKCRLEAEVLKL 144
8************************************************************************************* PP
HD-ZIP_I/II 88 reelke 93
+e+l++
Itr_sc000062.1_g00018.1 145 KEQLSD 150
**9975 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 208 aa
Download sequence Send
to blast |
MTTNLSNNHL DDPMAMISEY YSGVYTHNFV PEQVEAKPRR RRRKSKGGEG GDGGVEMIRK 60
RKLSDEQVKL LEQSFWDEHK LETGRKDRLA SELGLDPRQV AVWFQNRRAR WKSKRIEEEY 120
SRLKSEHETA VVEKCRLEAE VLKLKEQLSD AEKKIQRMSL ELSDGASAAS PSSSSFSMVS 180
SPPFLGDQFI TGSFDNVFYV PEWDNLYI
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 40 | 45 | RRRKSK |
| 2 | 41 | 61 | RRKSKGGEGGDGGVEMIRKRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
