PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000057.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 352aa    MW: 38549.2 Da    PI: 4.8015
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000057.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.3e-35111022102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              F++k+y++++d++l+ li w +++nsfvv+d+ +f++k+Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF++++F 
  Itr_sc000057.1_g00014.1  11 FVMKTYQMVNDPKLDALIAWGRDNNSFVVVDPLDFSQKILPAFFKHSNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFL 87 
                              9****************************************************************999.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +g+++ll++i rkk+
  Itr_sc000057.1_g00014.1  88 RGQTHLLRNIVRKKH 102
                              ************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.8E-517100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.03E-338100IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.5E-378100IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-161134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.5E-3011100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-164961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-166274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEDNNNIVAP FVMKTYQMVN DPKLDALIAW GRDNNSFVVV DPLDFSQKIL PAFFKHSNFS  60
SFVRQLNTYG FRKVDPDKWE FANEWFLRGQ THLLRNIVRK KHGGIGRVSV QHRHEEGEDD  120
DEEIVAEIER LKEEQKALEI ELQSMNKRLE ATERRPQQMM TFLGKFVDDP EILTRMMLEK  180
ERARRLSLSS GEKRRKLAMS ESSSVKSEEL EEEVIIRGGG GGAISSISSP DANFDVDTFC  240
QSSPEPPSPA AVWLSGGGQL VGGWPIPMIL NDLGKNNCAA AISTTSLSSG SSESCSYTVA  300
TPLDGFPNYD NRGGTGDSSC YGGGGGGASL SGEAASPSPP PPYPFSLLGG GF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A3e-2481007110Heat shock factor protein 1
5hdn_A3e-2481007110Heat shock factor protein 1
5hdn_B3e-2481007110Heat shock factor protein 1
5hdn_C3e-2481007110Heat shock factor protein 1
5hdn_D3e-2481007110Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191527.11e-179PREDICTED: heat stress transcription factor C-1
TrEMBLA0A314L4Z61e-124A0A314L4Z6_NICAT; Heat stress transcription factor c-1
STRINGXP_009770587.11e-125(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.15e-78heat shock transcription factor C1