PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000055.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 355aa    MW: 40234.7 Da    PI: 5.8366
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000055.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.55.9e-35141042101
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl k+ye+++d+++++++sws+ g+sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+kv+ e+         weF++++F 
  Itr_sc000055.1_g00006.1  14 FLAKTYELVDDRATNSVVSWSRGGRSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDAEQ---------WEFANDEFI 90 
                              9***************************************************************9998.........********* PP

                              XXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkk 101
                              +g+++ll++i+r+k
  Itr_sc000055.1_g00006.1  91 RGQTHLLKNIHRRK 104
                              ************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.1E-3810103IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.45E-3510103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.3E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDGTQGGSAS PAPFLAKTYE LVDDRATNSV VSWSRGGRSF VVWNPPEFAR DLLPKYFKHN  60
NFSSFIRQLN TYGFRKVDAE QWEFANDEFI RGQTHLLKNI HRRKPIHSHS AQPNSGAPLS  120
ESERRELEEE IESLRQENTS LRVELDRREQ ENRDCRFEFQ SLNSRLQSVD ERQRQVVALI  180
AQQISLKPDL MHRLEIVHNK KRKPSVSNGQ LELVNNLESS ITVCHNILNG ISNGEEAYGN  240
FETLPLQASP VIVTDFQAPS GDSRFSSPST QTDTPEISSF HTNAACAVDV DRLKDRFEGR  300
SSTAAVPVGG NDVFWQQFLT EEVESERREI GMRNGRECMI VFAEQMGHLT PATGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-24310319129Heat shock factor protein 1
5d5v_B3e-24310319129Heat shock factor protein 1
5d5v_D3e-24310319129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1716165e-45GU171616.1 Ipomoea batatas microsatellite Stv_Ipb_318 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193437.10.0PREDICTED: heat stress transcription factor A-4c-like
TrEMBLA0A2R6QBW41e-103A0A2R6QBW4_ACTCH; Heat stress transcription factor A-4b like
STRINGMigut.H02116.1.p7e-93(Erythranthe guttata)
STRINGMigut.M00209.1.p5e-93(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.15e-66HSF family protein