PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000054.1_g00045.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SRS
Protein Properties Length: 527aa    MW: 54195.1 Da    PI: 8.4097
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000054.1_g00045.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702199.69.5e-622874485154
                   DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrel.kskkqs 84 
                               ++CqdCGnqakkdC h+RCRtCCksrg+dC+thvkstWvpaa+rrerqq  +++s  a ++a      ++ +k++r    +++q+
  Itr_sc000054.1_g00045.1 287 VSTCQDCGNQAKKDCIHRRCRTCCKSRGLDCSTHVKSTWVPAARRRERQQGSQSTSPAAVTAAscsqsVSSGAKKPRLVlGNNSQT 372
                              469*********************************************99887766555444445554566677777663455566 PP

                   DUF702  85 alsstklssaeskkeletss.....lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                              + +st+ ++a+++++++t +     +P++v ++a frcvrvs vd  +++e+aYq++v igGhvfkG+LydqGl++
  Itr_sc000054.1_g00045.1 373 SHTSTSNNTATTPRSFDTGDsgggsMPKQVTAPAEFRCVRVSPVDGgEDDEFAYQAVVRIGGHVFKGFLYDQGLDN 448
                              6666666777888888887789999********************967889**********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.7E-60288447IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.8E-27289331IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.5E-25398446IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MIVAEAAHLH GQSGMLHIPN SVEGENLPRR QRRCIGILSG RHGKGHNHAL GRAIKVLGAR  60
IVPHAREEQF FSPSLHGQEL CLMHVRSNSS PLVSTAKNLK IKSAVVATGS RRAVLQSCSD  120
SNFADWAVAV ASSSATHSSA APAFGDLSLG FNAAPNSAVD GGAASAAAAA HVGVWSSSSA  180
RQMQQQISHG VPPDMGMFVV APAASFLHHH HHFQPACISF DGSATVSGGG LQLWQSQDAP  240
APAADISYSK KPGEHPHGSP SSNSQSFFQL HGAGAGGGSG ATAGAAVSTC QDCGNQAKKD  300
CIHRRCRTCC KSRGLDCSTH VKSTWVPAAR RRERQQGSQS TSPAAVTAAS CSQSVSSGAK  360
KPRLVLGNNS QTSHTSTSNN TATTPRSFDT GDSGGGSMPK QVTAPAEFRC VRVSPVDGGE  420
DDEFAYQAVV RIGGHVFKGF LYDQGLDNDG DDHAGNNAHH PGLFPNISDL NLGARGGNNN  480
VILGGTTSSA PPILAPSSSE PHDIFAAGAG GIIGMGGGSN FGIGNPF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199073.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A484N3J21e-103A0A484N3J2_9ASTE; RING-type E3 ubiquitin transferase
STRINGXP_009604000.13e-82(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76552331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.26e-52Lateral root primordium (LRP) protein-related